Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.053 67 5.1 2.4 5 29 20 44 17 52 0.79

2 10 0.014 17 7.0 0.3 9 30 57 75 46 84 0.76

3 10 0.016 20 6.8 0.5 14 38 86 107 79 112 0.76

4 10 0.055 69 5.1 0.2 14 36 115 134 108 141 0.78

5 10 0.1 1.3e+02 4.2 1.8 18 43 147 176 143 177 0.69

6 10 0.16 2.1e+02 3.5 3.7 11 29 176 194 167 202 0.78

7 10 0.0019 2.4 9.7 0.6 8 37 206 231 195 238 0.70

8 10 0.07 88 4.7 0.5 15 31 237 255 230 262 0.73

9 10 0.054 68 5.1 0.4 14 38 265 286 257 291 0.78

10 10 0.0015 1.9 10.1 1.6 18 44 297 320 288 320 0.88

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.053	67	5.1	2.4	5	29	20	44	17	52	0.79
2	10	0.014	17	7.0	0.3	9	30	57	75	46	84	0.76
3	10	0.016	20	6.8	0.5	14	38	86	107	79	112	0.76
4	10	0.055	69	5.1	0.2	14	36	115	134	108	141	0.78
5	10	0.1	1.3e+02	4.2	1.8	18	43	147	176	143	177	0.69
6	10	0.16	2.1e+02	3.5	3.7	11	29	176	194	167	202	0.78
7	10	0.0019	2.4	9.7	0.6	8	37	206	231	195	238	0.70
8	10	0.07	88	4.7	0.5	15	31	237	255	230	262	0.73
9	10	0.054	68	5.1	0.4	14	38	265	286	257	291	0.78
10	10	0.0015	1.9	10.1	1.6	18	44	297	320	288	320	0.88

Coding Sequence: ATGATACCTGCAGTAAATGTAAGGAATCTAGGATTTTCATCAGAATACCATTTAAAACGTCATATCAGTAATTTTCATGAGAAATCATCTACTCACGTCTGTGATATTTGTGGGCgtgcatataaaaataaacctgCATTTAAGCGTCATCATGATGAGCATCTGGGTATTGTTTCTCAAGCTGTACAGTGTGCGATTTGCAGCAAATGGCTCAAGAATGAAAATTCGTTACGTTTGCATCGTTTTACCCACGAGGAACATCCAGTGTCGTGCGATATTTGTGGTAAAATCTTCAATACAACACTTAGACTTTCAAGTCATAAAGTATATTGGCATACATTGGACACGAATTTACAGTGTAGTTTTTGCGATAAAGTATTTCGCGAAAAGCGTAATCTTGATGAGCACATGGCCATACATACTGGCGTTCAACTTTATACATGCCCCCATTGTGGGAAAGACTCACGTTCGaaatcaaatatATTTACATCACAATACCATTTAGATCgtcatattaataattttcacaAGAAATCAACTACTCACGTCTGTGATATTTGTGGGCGTGCATATAAAACTAAAGCTGCATTTAAAAATCATCATGATGAGCATCTAGGTATTGTTTCTCAAGCTGTACAGTGTTCGATTTGCAATAAATGGCTCAAGAATGAAAATTCGTTACGTTTGCATCGTTTTATCCATGAGGAACATCCGGTGCCGTGCGATATTTGTGGTAAAATCTTCCAAACACAACGCAGACTAACAACACATAAAGTATATTGGCATACATTGGACACGAATTTACAGTGTAGTTTTTGCGATAAAGTTTTTCGTCAAAAGCGTAATCTTGATGAGCACATGGCCATACATACTGGCGTACAACTTTATACATGTCCCCATTGTGGCAAAGACTCACGTTCGAGATCAAATATGTATGCGCATATTAAAAGGATACATCCAACTGAATGGTGGAAATCGAAAATGGAGCGTCTAAATTTGAAACCTAAAAATGAAATCCAATCGGAGGagcatcaataa
Protein Sequence: MIPAVNVRNLGFSSEYHLKRHISNFHEKSSTHVCDICGRAYKNKPAFKRHHDEHLGIVSQAVQCAICSKWLKNENSLRLHRFTHEEHPVSCDICGKIFNTTLRLSSHKVYWHTLDTNLQCSFCDKVFREKRNLDEHMAIHTGVQLYTCPHCGKDSRSKSNIFTSQYHLDRHINNFHKKSTTHVCDICGRAYKTKAAFKNHHDEHLGIVSQAVQCSICNKWLKNENSLRLHRFIHEEHPVPCDICGKIFQTQRRLTTHKVYWHTLDTNLQCSFCDKVFRQKRNLDEHMAIHTGVQLYTCPHCGKDSRSRSNMYAHIKRIHPTEWWKSKMERLNLKPKNEIQSEEHQ

Sequence clustering based on sequence similarity using MMseqs2