Basic Information

Gene Symbol
Trerf1
Assembly
GCA_956483635.1
Location
OY101447.1:186416888-186441025[-]

Transcription Factor Domain

TF Family
MYB
Domain
Myb_DNA-binding domain
PFAM
PF00249
TF Group
Helix-turn-helix
Description
This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 1.4e-09 4.4e-06 28.2 0.1 3 45 1726 1768 1726 1769 0.94

Sequence Information

Coding Sequence
ATGTGTAGTACGTCGGTGGGTACAGAAGCTTCGGTAACATTACATTTACGCGATGTTAATTCCAATGATTCAATACAATCAAATCAATCATCACCAGAAGCAATCGCTGCAGCAGCAACAACTATTATTACATCATCAACAAATACCCATCATACAGCCGgtgcagcaacaacagctacaacgACGgcgacaacaacagcaacaacattgGATAATGCATTAACTATTGGTTATCCCGATCCAGATATGTTGGCTGATGTTTTAGGTACCTTACAAACAGCATCTCTTAAAAATACAAATCCCAGTGGTGAGAGTACAAAGCAAAATTCCTCCAAACTAACAAATACCAGCGATATTTCCAATGCCAATTTAAATGGTACGATTAAGAATCGTATAACAATTAGTAAAAGATCCTCGAATATAATCAACAATAATTCTCAAAATACCAACAgcaataataacatcatcaacAATAGCAACTGCCATAATAGCAACAACATCAATTGTATACGAGACATTTCCAAAACGACAACCACATCGGCGGTGCAAACGGTATCGACATCAACGAATACTACAACCgctgtaaataaaacaaacagttATATAAAGAATTGTCTAATACGAAGTAGCAGTTGCAGCAATACCACAAACCTAACATCGCTGGCTCAGATAATGAGCAATAGTAATAACAATAACAGCCATAGTAATAGCAATAATAGTAATCAAACCAATAATAGTTTAGCTGTCAACTGCAACggcattaataataatattaataataacagCAATAATAATTTGAACCAACTAAATAGCAGTCAGACAACCAGTAGCAGCAACAATAGCTGCAATAGCAATTTTAGTTCTAGCAGCAACGACAGTTGTTTTAGCTATAGCAGCAATAGCAGTAGTGGCAATTCAGTTGCACGCAGTATAGCATCGTTGAGTCACGGTAGCCGCAAAGTTCCTGGTCCATTAACAACAAATCCaccgaaaatattaaaaaagagcCGTTCAAAAATATCATCACCCAGTCGTCACGGTCCACAGCAGTGTCAGatttgtaataaaatttttggaaatgcATCAGCTTTGGCCAAACATAAACTGACGCACAGTGACGAACGGAAGTACGTGTGTGCTATGTGCTCGAAGGCATTTAAGAGACAAGATCATTTAAATGGGCATATGATGACAcatagaaataaaaaaccatATGAATGTAAAGCTGATGGTTGTGGCAAATCATATTGTGATGCTCGTTCATTAAGAAGACACACGGAAAATCATCACGCCGGTATTATAACACCACACAATCAACAACTCACAATATCCAATAACAATTCCAATTCAAATTTAAGTTTATCCCCAGCAACAGCAAACGGAGACGCCAGTTCACCTGATGGTGCCACTTGTTTAGGAACATATCTTTCCAACGGCGGTACAGTAGTCGATGCAGCCACAGGTTTAGCTTTAACAGAAGAAGAATTGAAAGCTTTAAATGTGCCCTTGAAAACAGGTGTCACTTTATTATCACCCACGTCGACTACATCCTCAATGTCTTCGACTAGCAGTATGTCGAGCGGTACCGGAGCCACCATTACTCTAACCGATAACAGTGGTAATTTAGATGGAGAAGGTTTGACGCGAGAGCAGTTGGATTTGATTAGTAAAATAATGAGACAAACTAAACAAACCACAGCCCAAGTAACAGTATCCTCACCTACCAGTAGTCAGTCATATAAAATAGATACAAACCCTCAAGCTTCAGCTCAGACTCAAACGCAAAGTTCCCGACCCCGAACCTGGAATATGCAATTGcTTAATACCTCTCAAAATGTTGCAATTACCGTTGATGAGGTCAATGCGGATGGAACCAATGATTCCCCGactaaaaatcaaacaaatgcCAAAGAGGAAGAAATCGAACTTGATTTATCCAATGCCATTAATTCCAATCTGTtcaatttagtaaaaattgatCAAAAACCTGTTGAGTGTAATTTATGTCAtcgcaaatttaaaaatgtacccGCCCTTAATGGTCATATGCGTTTACATGGTGGTTATTTTAAAAAGGATCCAGAAACGAAAAAGAGTGAAAAGAAAGAGAACAGTGGACCGCCCTTGCAGACGGCCAGTATAGGTGTAAGAGCCTTGATTGAAGAGAAGATAATTAGTAAACGAAGTAAAGATTTAAATAAGGGTGCCTTTGTAGTCCCCGCACCGCCCTCGAGTAGTACCCAAAATAATACAACAACCATTCGTAGATCAATTAGTGATTTGGATGGTTTCCTTAACCCCAAGACTCCATCGAATAGTACAACTGtaataaatcaacaaaattccatacaacagcagcaacaattaCCAGCGATAACAACAATTAAAACTAATCCAAAGTCCAACATAAATGTGCAGGACATAAACTTGCCGCAAAGTATTGAAATCTATAGTACcaaacagcaacaacagaaTCATCAGCAGCAACAAAAGACAATGAATAATATAGGAGTAGGTACCTCAACTGCATCCTTAAATGCCGAACGTGGTGCAACGAAAACAACTACATCGACAGCAGCAACGATTAATACAACGACAACACGAAGTACATCAACCGATCCAAAAGATTCGACTTTAATCGAATTATTAAAACGGGGTACACGCATAGCAGTCACCCAAAAACAGCCAAATAACAATACACCCTTGGGTGGAGTTAGCCGTCAAATTATaacgaataaaaataattgtagtGTGATTATACCTTCAGAAGTTCAGGTCGTATCGACAAAGGGAAAGCTCAAAAAAGATGATACTATACAAATGTCGAACTCCACCAATGTTACCCTACCGGATGGCACTCCTTTATCCCTAACTATAGCCCAAGGAGCGGATAGCAACAGTGAGGTATACACGGTCACCTATACCAGTGATGGGTCCGGTCTATTTAGCGAAAACGAAGTTTACAATGTCAGTGAAGCCGAAATGTTATTGCAAACAGTTGATACCATGCAATTGCTGGGTGGTGCTGGAGACAATTTAAAATCTGAACATTCCGAACAATTTGAGATAatggataataaaattaaactggAAATTGATCAGCAAAACTGTGTggatcaacaacaacagcaacagcaacagcaccAGCAATCACTGCAACATAACTCCAATCAGTGTCAAACTACACAAACTTTACCAAACTTCCAACATTTTCATTCCAAAGAATTAATCATTCAAAATCCAGCTTTAATCCAGCAGCAGCATATAAGAAACAATAGTTTATCTTTGCCACAAGACCTTAAAACTCAGTTTGCCTCCAATCTCAATTCGCCCATACATTCTCCTTTAGCTTATCCCACTCCACCTTCCAGTCATGAAAATGTTACACAAACATCTCCATATATAGAAGACAATCATCACTTCAATGATACACAGAACATCTTCTTCAGCGAGTCTTTGATTTCCGCTAATAACGCCAGAGAAACTGAAAATGAAAAGATAATGAAATTGAAAAGTGTACTTGAAGACAATTCGTTTGATTCGAATATAAAAGTTGAAGATTTGCTCAACGGCACCGATACTGATGCTGAATGTGATTTACGTGAATTTGCCGAGGCAAGCTTATCTTTTCTTGATGAGGATCAGGAGTTTCTAAATGATTCACGTAATGCCACTTCACCGCTCTCAGAATCATTTTTTACCAGTGGCATAGGAACAGCGGAAGAGGTCAAAGAAGTTTTACGTGAAGTTTTGACAGAAGATCAGCTGAATTGTGAAAATCAAGGtgaaaatattattgatttatATTATTTGCCCGGCCTAAGTTTGCAGTCACAAATGATGCCGAATTCTGAAGATCCATTATTATCTTCATCCCCTCGAGATTTTGGACAGCAACAGAAAACACTAAATCCTATGCAATctcagcagcagcaacaacagcaaccacAAGCTGCAGCTCAACTCACGCAGCAACAACAAATCCAACACATTCctcagcagcagcagcagcagctgctgcagccacaacagcatcATATACAATACAGCAATCAACAGCAGCTGCAGCAGTTGCAACCTCAAACAGTTAAAATATCTTTAGACTCGAATGGTCAAACTTCTTCATCATCCTCCTCAGAAATCAATCAACTGATTTTGAATATTCCTTCAAATATAATACAGAATTCTTGTAATCCCTCCTCTGTAAATTCTTCCTCAACAACTGCTGCTACTATACACTACAATATAGACAATTTTCCACAAGTACAAAATCAATCtttgcaacaacaacagcagcagcagcagcagttacagctacagcaacaacaacaccagCAACAATCACAATTTCTAACATCCACTACCATAAACTCACTCAACGAGGCCTTAATGCAGCCGATTCTCTACACTAGTGGTACCACCGATAAAATGGACAACAATAATCCCAACACTTCTACTAACccacaaatacaaaatattattaatctcAATAAACCAGTAGAGATTGTGAAAAATACATCAACAAGTCATGTAATGTTTTCGCAGCAAATTCACTCCTCAAATTCCAATGCCTGCACCAATTCCTTACAGCCGCTATCGAATCAAACCAACTCTATATTAAAGAGACGTTTGAAGGGTCACTCCTTTTTGGAAGCCTCCTCATCACATTCTTATTCCAAATACCAAACACTATCGCCCTACAAGTCAAAACTACGAAAACCTTCGCGTACCCACTTTACACCAGCTCCTATACTAAATCCTGAACGTAAAGGTTACGGCTTGTACTGTAACGTTTTAAAACAACTGAGCTGTTCGCTTTTGACTTTCGATAATTTCGATGATGATTTCGATGATCCTGTAGGTTTGGTAGATTTCTCCGATGAATCTAAAGTCAATTTAGGTTCTGCTTACCAAGCTGCTATACCTGCATTTAATGAAAACGCCAGCTCCAGTTCGTTCATAGGTGAAACGGTTGGTTGTGATCTCATGTGGGATCCAGAAATTCAAAAGGATGAAAAGATTTTGATGAGATTTATTGATTTAAGTAAATCATCAGCCGTGCCGCTGGGAAGTCATTCTGAAGAGGTTGCCCTACAGGCCTTGTTGAAGGCTCAGGGTAATACAGCTACAGCGGTTTTAAGTTTATTACAAACTCAATCGAACTCATTCCAAATTAAATGGTCATCCTCAGAGTTGGAGATGTTCTTGAAGGGCTTGGAAATACATGGGaaagaatttagtaaaatatcGAAAGAGctcgGCTCAAAAACAACTGGAGAATGTGTGCAAATGTATTATTTCTGGAAAAAGTTATGCGTGGACTATAAGGTTACCCACCTAAAAACCGAAATACCACCACCAAATCATGCCAATGATCCGAAACCTTATGTATGCGAAATACCAGATTGCTCAGCGAGTTTTTCTTCTAAAGCTGCTCTGCATGGACATACTCGCATTCATACTTATGGCCGCAATACTCACAATAATCAACATAGTAATAACAATACGAATGCAACTGCAACAgctactaataataataatgccaATTCCTCTCAAGGCCCTGCCACCAGTAGTAATAATCATCCAATGCATAATAATTCCCAATCTAGTCATAACAACCCGGCGAATCCAAATCAAAAAGATACAAATGCCAATAAAGACAATACAGAATTTCCCTGCAAGGTGTGCGGCAAagtattcaataaaattaagagCCGTAGTGCCCATATGAAGACCCATCGTGCAACAGATAATGAAACAACTGTACAAACTATTAATAATCAAAATCAAATAATACAACAACAGCAGctgcaacaacagcaacagcaacaacagcagcaacaacaacaacagcaacagcagcatcaacaacaacaacaacaacagcaacaacaagcacaacaattataa
Protein Sequence
MCSTSVGTEASVTLHLRDVNSNDSIQSNQSSPEAIAAAATTIITSSTNTHHTAGAATTATTTATTTATTLDNALTIGYPDPDMLADVLGTLQTASLKNTNPSGESTKQNSSKLTNTSDISNANLNGTIKNRITISKRSSNIINNNSQNTNSNNNIINNSNCHNSNNINCIRDISKTTTTSAVQTVSTSTNTTTAVNKTNSYIKNCLIRSSSCSNTTNLTSLAQIMSNSNNNNSHSNSNNSNQTNNSLAVNCNGINNNINNNSNNNLNQLNSSQTTSSSNNSCNSNFSSSSNDSCFSYSSNSSSGNSVARSIASLSHGSRKVPGPLTTNPPKILKKSRSKISSPSRHGPQQCQICNKIFGNASALAKHKLTHSDERKYVCAMCSKAFKRQDHLNGHMMTHRNKKPYECKADGCGKSYCDARSLRRHTENHHAGIITPHNQQLTISNNNSNSNLSLSPATANGDASSPDGATCLGTYLSNGGTVVDAATGLALTEEELKALNVPLKTGVTLLSPTSTTSSMSSTSSMSSGTGATITLTDNSGNLDGEGLTREQLDLISKIMRQTKQTTAQVTVSSPTSSQSYKIDTNPQASAQTQTQSSRPRTWNMQLLNTSQNVAITVDEVNADGTNDSPTKNQTNAKEEEIELDLSNAINSNLFNLVKIDQKPVECNLCHRKFKNVPALNGHMRLHGGYFKKDPETKKSEKKENSGPPLQTASIGVRALIEEKIISKRSKDLNKGAFVVPAPPSSSTQNNTTTIRRSISDLDGFLNPKTPSNSTTVINQQNSIQQQQQLPAITTIKTNPKSNINVQDINLPQSIEIYSTKQQQQNHQQQQKTMNNIGVGTSTASLNAERGATKTTTSTAATINTTTTRSTSTDPKDSTLIELLKRGTRIAVTQKQPNNNTPLGGVSRQIITNKNNCSVIIPSEVQVVSTKGKLKKDDTIQMSNSTNVTLPDGTPLSLTIAQGADSNSEVYTVTYTSDGSGLFSENEVYNVSEAEMLLQTVDTMQLLGGAGDNLKSEHSEQFEIMDNKIKLEIDQQNCVDQQQQQQQQHQQSLQHNSNQCQTTQTLPNFQHFHSKELIIQNPALIQQQHIRNNSLSLPQDLKTQFASNLNSPIHSPLAYPTPPSSHENVTQTSPYIEDNHHFNDTQNIFFSESLISANNARETENEKIMKLKSVLEDNSFDSNIKVEDLLNGTDTDAECDLREFAEASLSFLDEDQEFLNDSRNATSPLSESFFTSGIGTAEEVKEVLREVLTEDQLNCENQGENIIDLYYLPGLSLQSQMMPNSEDPLLSSSPRDFGQQQKTLNPMQSQQQQQQQPQAAAQLTQQQQIQHIPQQQQQQLLQPQQHHIQYSNQQQLQQLQPQTVKISLDSNGQTSSSSSSEINQLILNIPSNIIQNSCNPSSVNSSSTTAATIHYNIDNFPQVQNQSLQQQQQQQQQLQLQQQQHQQQSQFLTSTTINSLNEALMQPILYTSGTTDKMDNNNPNTSTNPQIQNIINLNKPVEIVKNTSTSHVMFSQQIHSSNSNACTNSLQPLSNQTNSILKRRLKGHSFLEASSSHSYSKYQTLSPYKSKLRKPSRTHFTPAPILNPERKGYGLYCNVLKQLSCSLLTFDNFDDDFDDPVGLVDFSDESKVNLGSAYQAAIPAFNENASSSSFIGETVGCDLMWDPEIQKDEKILMRFIDLSKSSAVPLGSHSEEVALQALLKAQGNTATAVLSLLQTQSNSFQIKWSSSELEMFLKGLEIHGKEFSKISKELGSKTTGECVQMYYFWKKLCVDYKVTHLKTEIPPPNHANDPKPYVCEIPDCSASFSSKAALHGHTRIHTYGRNTHNNQHSNNNTNATATATNNNNANSSQGPATSSNNHPMHNNSQSSHNNPANPNQKDTNANKDNTEFPCKVCGKVFNKIKSRSAHMKTHRATDNETTVQTINNQNQIIQQQQLQQQQQQQQQQQQQQQQQHQQQQQQQQQQAQQL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00921633;
90% Identity
iTF_01138385;
80% Identity
iTF_01138385;