Prud007856.1
Basic Information
- Insect
- Panzeria rudis
- Gene Symbol
- -
- Assembly
- GCA_956483635.1
- Location
- OY101447.1:97810170-97826664[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.1e-09 5.9e-06 27.4 0.0 4 35 14 45 12 51 0.93 2 2 0.13 2.5e+02 2.9 0.0 1 35 553 588 553 592 0.89
Sequence Information
- Coding Sequence
- ATGCCGAAAAAAGGGGAAATAAGAAAATGGGAAACTCAAGACATGAGAAGAGCCATACAGGTTGTTCGAGATGGTGAAATGGGTATTCTCTTGGCATCAAAAACATTTGGTGTACCCCATACAACTTTGCAACGGAATGCAAGAAGTGATAAAACCATTGAAGAACTTTTGGGAAGTAAGCTTGGTCGACCCCCAACATTGACTGCGAATATGGAAAATGAGTTGGTTCAGTATATATTGGAAATGGAGTCACGATATTGGGGACTAACAAGGGCCGATATACGATCGTTATGTTTTCAAATTGCCACAATCAACAAAATTCCCAACAAGTTCTCTATAATGAAAGAATGCGCTGGAAGATACTGGTTAAACGGTTTTATTAACCGTCATCGAAGCGTTTTAAGCTTTAGAAAACCAAGTGGGACCAGCGCAGACCGTGCTCGAGGTTTCTCTAGAGAAAATGTtgacacattttttaatttgcttgatCAAGAGTACACTAAGCATAATTTTCCACCTACACGTATCTGGAACGTAGACGAAACCGGTATATCAGTGGTGCCTtcacagcaacaacaaataattgcTAGAAAAGGCAAAAAGCAAATTGGTACGATGACATCAGCTGAGCGTGGGTCTTTAGTTACCGTGATTACGTGCATGAGCGCAGGAGGAGCGTTTGTGCcaccattttttatatttccccgTAAAAATCATAACCCACTTCTTATGAAGGATGCTCCCCCTGGTTCCAAGTCGGCGTGCCATTTATCTGGTTGGGTACAAATTCGTATTTTTACGGAATGGTTCCGCCATTTTTTAAACGAAACCAAGCCGTCTGCAGCCGAGCCGGTTTTGCTTATTCTAGATGGACATTACAGCCACACCCGCAATATAGAAGTTCTCAATTTAGCTCGAGAACACAACGTTACCATCATATCACTACCGCCTCATTCAACACACAAACTCCAACCGTTAGACAAAACATTTATGGgtccttttaaaaagtattataatGATGAAATCAGAAGATTCATACGAGAGCAAGGAAGAAAACTAACACACTTCGATATCACAGGCGTATTCACCAAAGCCTACTTAAAAGTTCAGACTGGCCAAATAGCGATAAATGGTTTTAAAACCACAGGCATTTatccttttaataaaaatatttttaccgaTGCTGATTTCATTGCAGAAAATGTATCAGATTCAGTGGAAACTACGAACAGCACAGTGGCAGAAACTTCAAATGACGTAATATCTGGGGATCAGGAAAGCCCTAGCACGAGTAGAAATCACATTACCCCCTGGGAGATTTCTCCACCACCTAAAATGCGGAAGCCAGAAACGAATCGCAAGGGTAGAAAAACTAAAGCTACAGTACTCACAACTTCGCCGTATAAAAACGATTTAATGCAGAGCATTGAAAACATCAACAGAAAACAAAGAAAGAAACCTGATTCACAATCAAGCGATAGTGATCAAAACCTTAACTTAAATGACACATCCGAGGAAGAGGACTATTCAGATGTTCCACCTACAAGAGACACCTTGTGCAATTACTGTGAAAAGGCTTATAAAGATGATGCCATAGTTAAGCCATGGGTTGCATGTTTGCAATGCGAACAGCGTGAAAAGCCAAAAACAGTGCGTACACCCGAGAATATTGCTGCTGTGGCAGAAAGTGTGCGTGAAGCGCCATCAACATCAATTCACCGTCGTTCTCAACAATTGAACATTTCGGAGACATCATTGAGACGAATTTTGCCTAAAGACCTTGGTGCTGTTAGCGACGAACAAGGGGAACGCGCCCATCaagatttaatgaaaattgaaaGAAACTATCAAGGATTTTGGGATAAAAGTATGCTGGGAGACTATTGTTGGACTCTAATACGTGAAACCGAACCAACGAAATACAAACGACAATCATATAACGCCATTCACTTTTGA
- Protein Sequence
- MPKKGEIRKWETQDMRRAIQVVRDGEMGILLASKTFGVPHTTLQRNARSDKTIEELLGSKLGRPPTLTANMENELVQYILEMESRYWGLTRADIRSLCFQIATINKIPNKFSIMKECAGRYWLNGFINRHRSVLSFRKPSGTSADRARGFSRENVDTFFNLLDQEYTKHNFPPTRIWNVDETGISVVPSQQQQIIARKGKKQIGTMTSAERGSLVTVITCMSAGGAFVPPFFIFPRKNHNPLLMKDAPPGSKSACHLSGWVQIRIFTEWFRHFLNETKPSAAEPVLLILDGHYSHTRNIEVLNLAREHNVTIISLPPHSTHKLQPLDKTFMGPFKKYYNDEIRRFIREQGRKLTHFDITGVFTKAYLKVQTGQIAINGFKTTGIYPFNKNIFTDADFIAENVSDSVETTNSTVAETSNDVISGDQESPSTSRNHITPWEISPPPKMRKPETNRKGRKTKATVLTTSPYKNDLMQSIENINRKQRKKPDSQSSDSDQNLNLNDTSEEEDYSDVPPTRDTLCNYCEKAYKDDAIVKPWVACLQCEQREKPKTVRTPENIAAVAESVREAPSTSIHRRSQQLNISETSLRRILPKDLGAVSDEQGERAHQDLMKIERNYQGFWDKSMLGDYCWTLIRETEPTKYKRQSYNAIHF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01137929;
- 90% Identity
- iTF_01137928; iTF_01137929; iTF_01137930; iTF_01137931; iTF_00435453;
- 80% Identity
- -