Prud020161.1
Basic Information
- Insect
- Panzeria rudis
- Gene Symbol
- -
- Assembly
- GCA_956483635.1
- Location
- OY101448.1:167364303-167366150[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 9.7e-08 0.00019 22.6 0.0 11 39 398 426 391 430 0.87 2 4 3.1e-13 6e-10 40.2 0.0 5 43 446 484 443 486 0.91 3 4 0.031 59 5.0 0.0 27 38 515 526 511 532 0.88 4 4 6.7e-15 1.3e-11 45.5 0.0 4 41 554 591 554 593 0.92
Sequence Information
- Coding Sequence
- ATGAATCATTTAAAATGGATGGGCCATTCGTCCACAATATTAGATATACATAAAAATCTCCGAGCTGATTTGAAGAGCTGTGAAGTGACATTAGTGGCCAAGGGACATTGTGTTAAAGCTCATCGTTTTGTTTTATCATCTTGTAGTGACTTGTTACGTTGTCTTCTAACTGATGTTCCCATTGGGCAAGAATGTTGCCTTATGATTCCCGATATTAAAGGTCATTTGCTGGATAATGTGTTAGCTTTTATATACTTGGGAGAATGCTCTTTATCATCCACAAATTTGTCAGAGTTTTTAGAAGCCATCAATGTATTGGGTATTAAGAGTGCCATAAGTTTTGAGTGCAATACAAATGCATTACAGACAGCACAATGTAGCAGCCACAGCACCATCGCACTAGATAGCAATACTACTATGGCGCCCGTGAGTAGCATATTACCAAACGCGGAGGTAACAGTTGAGGGTTCGGGCGATTCATTGCATCAGGAAGAAATGATTGAAACACAAACTGTAATCCCCAACGAGGCTCATATTGTAGCTGCAAATAGTTCTACTGGCACTAGGGAACTCGATTTTTTAGATGTATATCATGAACCGCAACACAAAATAACATATTCAATAGAACATGTTCCGGGGTCTACAGCAGgcaatgaatttattttaacgGAAAACTCTGGCACTTTCACACTTACCCATAGCGGCAAATTGGAACCAAGTACATCACCGGCGGAATCCACTAACATGGAAGTAACTGAGGATGAGGGTTGTGACACACATATTATAGAAGAATATAGCAGCAGCGATGAACCTTTAATACATATAAGTGAAACTGTACAAGACCAACAAACTGTCACAGTAGCCCAGTCTTTAACACAGCATCAGCAGCAGCACTCAACACCACTTGTCTCAGCAGCAACGACTTCAGCTTCAATTATACAAGTAAAACCGAAATTGAAAACCCTTAAGGTAAAACATCATCAGGGTACTCAAAGGATAATAGCCAATATGGAACAACTTTCTGAAGATACAGGCAGCGACGATCCCATATCAATATTACAAACGACAGATGAAAGTTTTACCTTGCTTAAAGATGCCTCCATAATATCTACAAGCAACACTAGTCACGACGAGTCAAAAGACTTTTCTATGAATACCTCAGAAACATCTGCAGTCGAATTGGCCTTCTTAGCCATGGTCAATGAAAACATGTCTTTGCCTAAGGCCGCCGACAAATTTAATGTTTCCAAATCGGAACTGTGGCGGCGAGTGCGTAGTACCGGTGTTGAACAGCTAAACAAATCAGTCAAACTCGATCCTGACAAGATTGACGTTTTAGAACTAGCTAGTAAGGCAGTAATAAACGAGGGCTTATCACTACAAAAGGCCGCCATACGTTACGACATTTCTAAAACCGTGCTCTGGCGCAGGGTCCGCAAACATCCGCTATATATGAAAACAGCACGTGAAAATCCGATAATAACAAAGGCCTACGAACGACTGAAATCAGGTGAATCCCTCAAAAGCATATCACAAGATTTAGATATACCCATGTCAACTTTGCACCGCCATAAAGTGCGTCTCTCTCAAACTGGTCAGTTGCCTGACTTTGTTACATGCAAAAAACGTGATAGCATGTCAAAAGATGATCTTAAATTAAAACTAGCTAAAGCAGTGCATGCTTGCGTACACGAAGGAATGTCACAAAATCATGCTGCTAACTTATTTCAAATTTCCAAAAGCACATTATGGCGACATCTCCAAAAACGCGTAGCTGAAGCCGAAGCAGCTGAGAGCGAGTCTATGGGCGATGAGGATGAAATTAAACAAGAAGTGATTCTTTCATAA
- Protein Sequence
- MNHLKWMGHSSTILDIHKNLRADLKSCEVTLVAKGHCVKAHRFVLSSCSDLLRCLLTDVPIGQECCLMIPDIKGHLLDNVLAFIYLGECSLSSTNLSEFLEAINVLGIKSAISFECNTNALQTAQCSSHSTIALDSNTTMAPVSSILPNAEVTVEGSGDSLHQEEMIETQTVIPNEAHIVAANSSTGTRELDFLDVYHEPQHKITYSIEHVPGSTAGNEFILTENSGTFTLTHSGKLEPSTSPAESTNMEVTEDEGCDTHIIEEYSSSDEPLIHISETVQDQQTVTVAQSLTQHQQQHSTPLVSAATTSASIIQVKPKLKTLKVKHHQGTQRIIANMEQLSEDTGSDDPISILQTTDESFTLLKDASIISTSNTSHDESKDFSMNTSETSAVELAFLAMVNENMSLPKAADKFNVSKSELWRRVRSTGVEQLNKSVKLDPDKIDVLELASKAVINEGLSLQKAAIRYDISKTVLWRRVRKHPLYMKTARENPIITKAYERLKSGESLKSISQDLDIPMSTLHRHKVRLSQTGQLPDFVTCKKRDSMSKDDLKLKLAKAVHACVHEGMSQNHAANLFQISKSTLWRHLQKRVAEAEAAESESMGDEDEIKQEVILS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00199788;
- 90% Identity
- iTF_01138174;
- 80% Identity
- iTF_01138174;