Basic Information

Insect: Panorpa germanica
Gene Symbol: -
Assembly: GCA_963678705.1
Location: OY783213.1:17255908-17260438[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.29 19 7.0 2.0 1 21 212 232 212 235 0.90

2 9 0.16 10 7.8 1.2 1 23 291 314 291 314 0.94

3 9 2.5 1.6e+02 4.0 0.1 3 20 406 425 405 426 0.87

4 9 3.7e-07 2.4e-05 25.6 0.7 1 23 502 524 502 524 0.98

5 9 6e-05 0.0039 18.6 2.3 3 23 542 563 541 563 0.96

6 9 0.00014 0.0092 17.4 3.6 1 23 569 591 569 591 0.97

7 9 0.00028 0.018 16.5 3.8 1 23 597 619 597 619 0.98

8 9 0.0028 0.18 13.4 1.6 1 23 625 648 625 648 0.98

9 9 8.2 5.3e+02 2.4 0.3 1 23 655 677 655 677 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.29	19	7.0	2.0	1	21	212	232	212	235	0.90
2	9	0.16	10	7.8	1.2	1	23	291	314	291	314	0.94
3	9	2.5	1.6e+02	4.0	0.1	3	20	406	425	405	426	0.87
4	9	3.7e-07	2.4e-05	25.6	0.7	1	23	502	524	502	524	0.98
5	9	6e-05	0.0039	18.6	2.3	3	23	542	563	541	563	0.96
6	9	0.00014	0.0092	17.4	3.6	1	23	569	591	569	591	0.97
7	9	0.00028	0.018	16.5	3.8	1	23	597	619	597	619	0.98
8	9	0.0028	0.18	13.4	1.6	1	23	625	648	625	648	0.98
9	9	8.2	5.3e+02	2.4	0.3	1	23	655	677	655	677	0.91

Sequence Information

Coding Sequence: ATGAGCAGCCTGGTAAATGTCACGGAAGCTTCAACCGGAAAAAATGGTCAACATTCTCTGTACACACTATCACTGCCTCTTGGAACAACAATTAATAAGATGGCTGAATTCGCAGATTTGCAAAATCAACTACAAGCCATACAATCGTTACAATTACAAGCTTTGCAAAGTCAAAACGATGAAGTCTCAATTGCTTTCGATTCAGGGGGGAATTTCGATGATTCCGAAATTCCACAGGATGATGAGACGTGGTCTCTACCACTTATATATGAGGAACAACCAATGCTTCTAAATGGTCTGGAAAATTTTGTGTCCCAAAATATGTTGAACGGAGAACAAGATATATCGGATATGACATTACCGAATGATTCAGATATTGATACTTCATCAGTTCAAATCGCTAATGACTCTACAGGGgcatatactattaatgttgaTGGTCAGCAATATGGCTTTCACTGGGTTGATGTTAAGAATGACAGCATGAACTCCAATATTATTCATTGCTCTGACAATAAATATGTTTCGAATGTAAATCATATTCCTGTTAACATAAATCAATCGGACCTTACcgataatttaattgaatatgaCCCAAATGACTTGACGGAAATAGCACATGTTATGACTGCTTACAAATGTAGAAAATGTGACTATACTATATATGATAAAGATGAATTTCTGGAACATTTTACGGACTATCATTTGAACACAAAAGAAGAATATTTGGATGAAATATTGCAACAAGATGACCAAATTATTGATGAGTCAAATCAAGTAGTTCAAACGCAAGAAATTGCACCAAAGGAAAATTTCGCAATTCCAGATTTACACTACCCTGATGTAACTATGGAAAGTGAACCCCAAATGTATTTATGTGGACAATGTTCCAAGAGTTATAGTAGTATTGACGAATGCAGAGATCACATGATTCGAGATCACAAGCTCAAAACGAAAAGTCCTACAAGTGAAGCagctaataataaaaatcatgAAACATCTAACGATGAAATACGcatgaaagaaaaggaaacaaCAGTATTGGGAGCTAATAATTCTAATTCAAAGGTTTCATCAGCAAATGTGATATCTGATAAACATAATCATGTTATAACAACTGAAAATAGTAAAGACAATTCTGAAGAATCTCATTGGTTGTTACCTAAAAGTATTAAAGAACTTAAAACTGCTTTATTATCAAATTGGAAAGCTAGGTGTGGAGTAACTACTTGTTTATATCGTTTTAAGGATACCAATAGTCTAGCCAAACATGTAGCATGTCATTTACCTAATCAAACGCGAAGGAAAAGTCCAACTACAAAAATGTTCAAGTGCTCAGAGTGTGCTCAAGACTTCATGAACTGGAGGGCATGCTCTTTGCATTTATGGAAAGAGCATTCTGTTGATGTGGACATGCTCACTTGTCCAGTTTGTTGCGAATATAAGACTTACACACTagTGAAATTAAGTCACCATTTAAAGATTCATAGCAGCATACGGGGTTTCGTCTGTAATCAGTGCGGCAAGGCATTCAAGCAGCCAACTCAACTCAGAAATCATACAATAACGCATCTAAAGGACCGGAATGATCAAAGTGTAAAGAGATGGTATACTGAAAAGAATTGTGAAATTTGTTCAAAAACATTTGCGGATTCAAAATGTCTGAAAAAACATATTCAGTCAGTACATAGTAAAATTCGACCTTTCATTTGTAATGTATGTGGACATTCTTGTACGCGTAAAGCTATGTTACAgATGCATTTAAGGCAACATACTGGGGAGAAACCATACAGTTGTACTGATTGTGATTATAAAACGAGTGATCACAACACACTTCGCCGTCATTTAATGAGACATAAAGGGATTCGTCCTTACCAATGTCCATATTGTCCGTATGCTGCAATACAAAGTTGTGCATACAAAACACATTTACGTAAAAAACATGAAGGTAAACCGGGACTATTTTCTTGTACAATATGTGCTTTTAAAACAGTAAACGAAAAGATATTGGAATCACATTTAATCTACCATAAGAAAGGTCTTATTCGTCCTGATAACATGAGAGACTCAACTGGATGGAGAACATACAcagGTCGGAATGATGGAGTTGAGGTTTTCCCGGGAAATATAGCAGCTGCAAGACTTGTCTACAGCTGTTTGGGTGAAGGTCCTCCGATGGCTAGTATTACACAAACAAATACACGTTCACAAACTTTAACAATACAGATTCCGGCTAGAGAATCAGAGGACGATGAAACTCAACACTGTTTTCTAGCTATGCACCGCAATGACACTGCCGAAGAGGATGTCGATAGAGGAGGAGTTACAATTCCAGCGGATATTGAACAATCTCAACAGGCTAAAGatgtatga
Protein Sequence: MSSLVNVTEASTGKNGQHSLYTLSLPLGTTINKMAEFADLQNQLQAIQSLQLQALQSQNDEVSIAFDSGGNFDDSEIPQDDETWSLPLIYEEQPMLLNGLENFVSQNMLNGEQDISDMTLPNDSDIDTSSVQIANDSTGAYTINVDGQQYGFHWVDVKNDSMNSNIIHCSDNKYVSNVNHIPVNINQSDLTDNLIEYDPNDLTEIAHVMTAYKCRKCDYTIYDKDEFLEHFTDYHLNTKEEYLDEILQQDDQIIDESNQVVQTQEIAPKENFAIPDLHYPDVTMESEPQMYLCGQCSKSYSSIDECRDHMIRDHKLKTKSPTSEAANNKNHETSNDEIRMKEKETTVLGANNSNSKVSSANVISDKHNHVITTENSKDNSEESHWLLPKSIKELKTALLSNWKARCGVTTCLYRFKDTNSLAKHVACHLPNQTRRKSPTTKMFKCSECAQDFMNWRACSLHLWKEHSVDVDMLTCPVCCEYKTYTLVKLSHHLKIHSSIRGFVCNQCGKAFKQPTQLRNHTITHLKDRNDQSVKRWYTEKNCEICSKTFADSKCLKKHIQSVHSKIRPFICNVCGHSCTRKAMLQMHLRQHTGEKPYSCTDCDYKTSDHNTLRRHLMRHKGIRPYQCPYCPYAAIQSCAYKTHLRKKHEGKPGLFSCTICAFKTVNEKILESHLIYHKKGLIRPDNMRDSTGWRTYTGRNDGVEVFPGNIAAARLVYSCLGEGPPMASITQTNTRSQTLTIQIPARESEDDETQHCFLAMHRNDTAEEDVDRGGVTIPADIEQSQQAKDV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -