Basic Information

Insect: Panorpa germanica
Gene Symbol: chid1
Assembly: GCA_963678705.1
Location: OY783204.1:16876483-16887949[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 4.3 2.8e+02 3.3 0.6 2 23 1763 1781 1762 1781 0.84

2 7 2e-06 0.00013 23.2 0.8 1 23 1787 1809 1787 1809 0.98

3 7 0.0037 0.24 13.0 1.0 1 23 1815 1837 1815 1837 0.90

4 7 1.8e-05 0.0012 20.2 2.2 1 23 1843 1865 1843 1865 0.99

5 7 0.041 2.7 9.7 4.1 1 23 1871 1893 1871 1893 0.96

6 7 4.9e-05 0.0032 18.9 2.1 1 23 1899 1921 1899 1921 0.99

7 7 0.00015 0.0095 17.4 0.5 1 23 1927 1949 1927 1949 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	4.3	2.8e+02	3.3	0.6	2	23	1763	1781	1762	1781	0.84
2	7	2e-06	0.00013	23.2	0.8	1	23	1787	1809	1787	1809	0.98
3	7	0.0037	0.24	13.0	1.0	1	23	1815	1837	1815	1837	0.90
4	7	1.8e-05	0.0012	20.2	2.2	1	23	1843	1865	1843	1865	0.99
5	7	0.041	2.7	9.7	4.1	1	23	1871	1893	1871	1893	0.96
6	7	4.9e-05	0.0032	18.9	2.1	1	23	1899	1921	1899	1921	0.99
7	7	0.00015	0.0095	17.4	0.5	1	23	1927	1949	1927	1949	0.99

Sequence Information

Coding Sequence: ATGGATTTTGAATGCACGCAAAGAATTCCGCTTGGAGATGTTTCAACGGATGTGATTATACCTCCAAATAAAcagAAAGGGATATTAACACTCGGTGGCTCCTCATATCCAGTGTTCGAAGGAAGTAATAAAATTGGGCGAGATAATAGCTGCAAAATTTGTATACCAAATAATatattatCAAAGCAGCATGCATTGATATATGTTGCTGGTGATACCCATCATATAAGTGATTTGGAATCACTTAATAAAACGTTTGTGGGTTctgatGAAAAACCTTTAACACCACACATATCGTCGATTTTGAAGGATGGTATAGCAGTCAGGTTTGGAAATATTGAGGGTGTTTACAACTATATTGAAgATGAAGAAAATGACATCGTTGATTTCCCAACAACACAAATGGTTCGACCAGAAAATCCTATAACATTGGATTGTGTTTTTAATGAGTCAATAGAAGTTCCTGAAACTCCTTCAGGATCGGAGGATGAATCAATCATTAATCGTAGTGTCAGTCCCGTTTTGAGTTTATTGGGGTCTAATTTGAGGAACAAATCGTGGATTAACGATGCTGAAACACAAATTCGTATAAAAGATCAAGATTTGACTGACAGCAGCCtcaataaacaaaatttgtCATCTGACAAAACTACACCTATAAAAAAATCTTCCGAAACACTGGAGTCTccatattttattgaaaagttaTGTTTAAGTGAAAGTGGTCCCGAAACATTTGAAGATAATAAGATTAATACTCCTGATAAATACAATTCTACACCAAAAGCATCTGTATTCCTCGCACCAGAAACACAATCTGTTACATTAGCGAGTAagagtataataaatatttcagtacCTGAAACACAAGATGTTTCGGTAGCTGGTACTAGTGGTACGGCATTCAAGAATATGCAAAGTGATTTAAATGACAGTGACTCAAATGATATTATATACTATAAGGAAGATTGCCATACtgcagaaattaattatgaGGCATCTCAATCAATTATGAACACAGTTGTTGAACAACCTGtagaaagtattattaacaaaaatgttaatacaaATCTAGACGAAATGTCTACAGATTGCGAGAGCGAAATAGATGTATCTAAAAGGAAAGTAGATAAGAAAGAGAAGGAGGAGATTAGACATCTAGCAATAGAATCCGCCAAACTAGATAATGACTCTACAGATTGCGAAGATCTTGAAGCttcacaaataaaaacaaaaagaagtCATCTTAACAGAAAACGAATTACAACAGATTCGACAGACTCTGAAGAAGATATATCTAAAATGAAAACACAAAAGTTCACAAAAAGAGCAAGCAAAAGTAAAAAGAAAGACAAAACACGAATACAAggtgaaaataataaattgaccgATTCTGAAGAAGATATGTCTAAAATGAAAACACAAAAATGGCATGAAAACAGCAACAACAataagaacaaaattaaaaataatttacaaaagaaaAGTAACAGTGTGTCTGATTCTGATGaagagctattaaatatgaaaacgcAAATTATTCCTAAAAGTGCCTGTTCCAATGATAACAAGAAAAGAAACGAAGTGGCCAATTTTGAAgaagatatatataatattgaaacaCAAATAACAGCCGGCAACTctaaaaacaaatttgaaaaaattgtgCACGAAAAAAGTTTGTCTGGATCTGATGAagatatatcaaatataaaaacacaaatgattcctaaaattatcaaaaatataaataaaaatcagaCAGCAGCATTAGAGAGAAGTAATAAATCGATTGAGAATAGTATTAATTCTCTTAACGACAGTAATAAAGCAAATAACTCTGACATTTTTAATCAAGTAACGCAGGTATTTGATAAACAtagtattgaaaaatataataatgaaagtaataattctgttaaaaatgatatttctaATGAAAAGACACAGGTTTACATAAGGTTATCTTCTTCACCAGAACAGGATATCGCTAATATACCTACACAAGTAGTGCCACTtcgaaataagaaattaaataactCAGTATTAGTAGAAAAAGGAAATACAgtaaatatgaatacaaaagaAAATGATCAAATGTTTCGAGTACCACAAATTACACCTCACAAGGAGTATGTACACAAGGAGAGTGTAAAAACACCTGCTGATAAAATAGTAGTCTCTACTAAAGAAACAATGGAGAGTGTTTTAAGGAATTTAGAAAATTCGTTCGATTCAGATAATgatgaattaattaatattttgcagAGTGCTGATGCGGATGATAATATCGATAGTATCTACTGTATGCAAGAAACTGAGGTTATTCAAGATAATGATGCAATGACGACTAGTACGCCACTAGTTCctgctttaaataataaaggttCTAAGGCAAACGTTCTCAAAGAAAATGATGTTCCCCCTAAAAAAGGTCGTGGAAAGAAAAATCTTCTAACAACACATTTTCGAAATACACGTAATAGAGAATCTGCTGGAAGAAAACAAACAAGAACCATAAGTACTGCAAATACAAACCCAGGTACTTCATCAAGGTCAAGTCCATATCTCCAACCTGTTGAAGATTTTATGGATTCTCACTTTACTGAAGATTTTCGTTCTGAAACGTCCTTACTTAAAGAATTTTCGACATCAATTCCTAAAAAGGAAAGTAAGAAAAACTTGATAATTCCTGAAAAAGAGTTTGCTTTATCTGATGAAGAAGTTTTAAAACCAGCTGCTGTTTTTAAGTATAAAGTCCCACCGAAATCGAAGGCTGCTAAGGATgatgataaaaacaaatctcCTGTACAAAATGTAAGAAAAAGTAGCAGAAAGGTAACTCCGAAGAAACGGAATGATGAGTATCATGAGGGTCGTGAGTTGAGggttattatagaaaaaacagTTTCTCCAAGTAATAGAAAAAGTAAAGGCAATTCCGCTATTAAAATATCAGATATCAAGTCTAAAAATTCTGAAACTGAGGAAAAAAgggaaaaagaaaataaaaccaCGAAAGTTGTGAAACTAAATGGTAGCAAACCAGAAAGTAATAATACAAATACTTCAAAAATAAGAGGTAGGTCAGTTAAATCTAAAAATTCTAGAACCGAAgaaaaaaacgaaaaagaaaGTAAAACTACGAAAGCTGTAGAACTAAAGAAAGACAAACCAGAAAATATTAATGCAAATACTTCTAGAACAAGAAGTAAGTCTAAACATATAGAGGAAGAAAATGTTGACAAAAGCACATCCGAAGGAATTAATGTGTCTACAATTGGTAGTAGACCTGTACGTAGCCGTAAAAGAAATTCTAAGTATGAGGAGCCAGAACCGAAACCAagcagaaaaaataaaaaagaatcagAAGAAAAAGACGAAATTGTTGCAAAGAAAGTAACAAAAGTTGCACCTGAAAAAAGAGTTTCTCAACGGGAGAAAAAGGTTGTtgaagaaaatatttctaacgATGAATCTGTAGTTATAATAGATAATCGCGAAGAGAAAACCACGAAACGAGGTGGCAGAAAACGTCAACTTGATGAAAAAGAGCCACAAAGTAAGGCCAAAAAAGTTGAACCTGAAAAAAAGGTTTCACATCGGGAGAGAAAGGTTGTGGAAGAAAATATTTCTGACGATGAATCTGTAGTTATAATTGACAACTCTGAAGAGAAAACTACAAAACGTGGTGGCAGAAAACGTAAAGTTGATGAAAAAGAACCACAAAGTAAAGCTGCATCTAAGAAGAAGAAGCCAAATATGCAAAAGgaTAATTTGCACAATAATGTATCTCTTTCGAATACATCTGTCATTTCAAATGAGAGAAAGAGCCGAACAAAAAATCACTTGAATTCTACTTCAAATACATCAATAATGTCGGTGCGTTCTTCTTCTCGAATTCAAGAAcatgagaaatataaaatattatttacaagtaTGGATGGGGCTGATGCACTGTCAAACAAAGTTAAAACTTTAGGTGGTCAAGTTGTAGAAAACATTGAACAATGCACGATATTGGTCACATCTAGAATAGTACGCACTGTTAAGTTTTTGTGCTGTTTGGTCAAAGGTGTTCCCATTGTAAACTCAAATTGGATAAATGATTCGCACAAGAAAAAGTGTTTCCTTGATCCATCCGATTATATTTTACGCGACAAGGCTGGCgagacaaaatataaatttaatttggaaAAATCTTTAAGAAGAGTTCAAGATAAACCACCTCTTTTACAAGGATATACTGTAATGGCTACACCTAATACAATACCATCACCAGCAGATTTAAaagGAATTATTGAATGGTGTGGGGGCACTTTAATTACAAAAGCTCCGTCTGGAACGTGGCCTGAGGACTCTCTTATTGTATCTACGCCAGAGGATAAAAAATACTGGCCGAAACAAACATCGCGAAAAATAATACCAGCAATTAATATATGTAGAGTATGTCTTCAGGAATCAGACTGGTTAAAGGATGTATTTGAAAAAGAACAGACAACGCCACTGTCAAATAAGATATCAGAATGTGCATCTATAAAGGTCTCCCGAGGTGATGGTTTGCCCGCTTCAATATgttatgattgtagtgttaaattattaacaGCTTATGAATTTCGAGGCTTATGTAGAAAAtctgattttaaattaagaagATTGTTATCATGCAAAACGAAAAATTCGGATAATATTCCTTCATTCCATGTCATTTTTAATGATCTTGAGCCTCCAGAAATTAAATCTgagattgaaataaaaaataatacaaaacgtaaactaGATCTATCGGATCCATCAACAGAAATGTTAATAGTAGAGGGTGAAAATACGacagtaataaaacaaataataagcaAAACAGAAAAAAAGAACTTCGttaaaagtttgacagttccaACAGAAGAGACGTCATTTGCTGATATAATTGAAGTAACAGTTAAAGAAGACGAAACTTTTCAAGATGATgcttcaaattttgatgattcaTCATTTCACGAGGAGGATACGCTTAGTAAAAATGCATTTACAAGTGATATGGATATAGAGAATATGAAACTTAGTGCACCTTTACCTCCAtcaaaaagaagaaagaaaaaggaTGGATTTACAAAGAGAAGTTTAAACAGTACTGATAGTGATAATTGGGAACCGGAAGATGATTTTCTGAAAGAAATAACGCGTccaaaacaaaagaaatacGAATTAAAAGAGTTAGATTATGATTTAGATGTACCATTAGTTCCAATAGGGCCGAAACCAAAAAAGAAGCCAGAATATAAGAAAAAACAATGCCAAGTTTGTGGAAAAATGACAACAGGACTGAAACTGCATATGCTGATTCATTTAGGGATAAAAGCGTTCGAATGCGAGTACTGTGGTAAAGCTTTTACACAGCGGATACAATATCAGCGCCATTTGAACATACATACCGGAAATAAACCATTTGTATGCAGTATTTGTGGAAAAGCATTTGCAGATAGCACTAGTCTAAGATGCCACAACGTCACGCATACGAAGGAACGGAAATATAAATGCGATGTATGTGACAAAGCGTTTGGTTATTCTCACACACTGACTGCACACAAACGGACGCACACACAAGACCGGAAGCATATTTGTTCCACGTGCGGAAGACCGTTCCTGACGAGGCATGGCTTGAAAAAACATTTCCGGATTCACACTGGAGAGAAACCCTATAAATGTGAATTTTGCGACAAGCGATTTAGCACAACAGGAAATATACAAACGCATCGAAGAATTCACACACGAGAAAGGCCTTACAAGTGCGATGTTTGTCAAATGACTTTCGCTTATAGGAGTGTTTTGAATACACATATTAAAATACATCAGAATTTAGCTGTTATAATAGATTGTACTCTTTCACCTAGTAAATctaaagataaagataaattaaagaaagatTACAAATTAAACAAAGGACCTGTAGATCTAGATGTATTTGCCAAAAATTTAATCCAGGAAACACCTTCTGCCAAAAGTATTTTAGTAGATAACCAAGCATATTACAAAGACACAGCAACAAAACGTTTTAATGGAACTGTTTTAGGTTATGTGACACCGTGGAATGGTCATGGATATGATGTTGCAAGAACATGGGCCAATAAGTTTTCTTCCGTAAGCCCAGTCTGGTTGCAATTAAAAAGGCAGTCTCacagaaaatttgttttaaatggaAAACATGATATTGACGCAGAATGGGTTAAGAGTGTTAAAGATCACGGTGCCGAAAATGAAGTTCAAATTTTACCTCGAGTGTTATTTGAAAATTGGACCCCTTCAGACATAAATGCTTTAAGTGACAAAAGGGAAGTTCAGACTTTGGCTTCATTTTTATCTGATTCTAGTATCAATGATGGATTTGATGGTTTTGTTTTGGAAATATGGTCGCAGTTGTTAGGAAGAGTTGACAccgaaatattaattgaatctATTGTTGCCATTTgttcCCACTTACACTCTACTGGGCAACAATGTATTCTAGTAGTTCCGCCATGGCACGGAAGTAACAATCCTGAATTATTTTCACGCGAAAATTTTGAGGCATTGTATCCTCACGTTACAGCCTTTTCATTAATGACTTATGATTTTTCCAATCCACAAAGACCAGgaCCAAATGCGCCAGCCCCTTGGGTGGAACAATGCGTATTGCATCTTGTACCAGATGCTTCGGCAGTTGAAAAAAGAGCGTCTATTTTAATTGGAATGAATTTGTACGGCAACGCTTATTCACCTCAAGGAGGGGGCGCTATTTTGGGACCTcaatttatagatttattgGGTTACTATAAAGGGAAATTGAAATATGACTCCGAGTCCAAGGAACAGTTTTTTGATGTGAAAACTCCTGATGGTCGCTTTGTTGTATTCTATCCAACTTTACATTCCATTAATGTGAGGCTAGAGCTGTCCATGCAGTTGGGAACTGGAATCGCTCTTTGGGAACTTGGACAAGGATTAGATTATTTCTtcgatttgttttaa
Protein Sequence: MDFECTQRIPLGDVSTDVIIPPNKQKGILTLGGSSYPVFEGSNKIGRDNSCKICIPNNILSKQHALIYVAGDTHHISDLESLNKTFVGSDEKPLTPHISSILKDGIAVRFGNIEGVYNYIEDEENDIVDFPTTQMVRPENPITLDCVFNESIEVPETPSGSEDESIINRSVSPVLSLLGSNLRNKSWINDAETQIRIKDQDLTDSSLNKQNLSSDKTTPIKKSSETLESPYFIEKLCLSESGPETFEDNKINTPDKYNSTPKASVFLAPETQSVTLASKSIINISVPETQDVSVAGTSGTAFKNMQSDLNDSDSNDIIYYKEDCHTAEINYEASQSIMNTVVEQPVESIINKNVNTNLDEMSTDCESEIDVSKRKVDKKEKEEIRHLAIESAKLDNDSTDCEDLEASQIKTKRSHLNRKRITTDSTDSEEDISKMKTQKFTKRASKSKKKDKTRIQGENNKLTDSEEDMSKMKTQKWHENSNNNKNKIKNNLQKKSNSVSDSDEELLNMKTQIIPKSACSNDNKKRNEVANFEEDIYNIETQITAGNSKNKFEKIVHEKSLSGSDEDISNIKTQMIPKIIKNINKNQTAALERSNKSIENSINSLNDSNKANNSDIFNQVTQVFDKHSIEKYNNESNNSVKNDISNEKTQVYIRLSSSPEQDIANIPTQVVPLRNKKLNNSVLVEKGNTVNMNTKENDQMFRVPQITPHKEYVHKESVKTPADKIVVSTKETMESVLRNLENSFDSDNDELINILQSADADDNIDSIYCMQETEVIQDNDAMTTSTPLVPALNNKGSKANVLKENDVPPKKGRGKKNLLTTHFRNTRNRESAGRKQTRTISTANTNPGTSSRSSPYLQPVEDFMDSHFTEDFRSETSLLKEFSTSIPKKESKKNLIIPEKEFALSDEEVLKPAAVFKYKVPPKSKAAKDDDKNKSPVQNVRKSSRKVTPKKRNDEYHEGRELRVIIEKTVSPSNRKSKGNSAIKISDIKSKNSETEEKREKENKTTKVVKLNGSKPESNNTNTSKIRGRSVKSKNSRTEEKNEKESKTTKAVELKKDKPENINANTSRTRSKSKHIEEENVDKSTSEGINVSTIGSRPVRSRKRNSKYEEPEPKPSRKNKKESEEKDEIVAKKVTKVAPEKRVSQREKKVVEENISNDESVVIIDNREEKTTKRGGRKRQLDEKEPQSKAKKVEPEKKVSHRERKVVEENISDDESVVIIDNSEEKTTKRGGRKRKVDEKEPQSKAASKKKKPNMQKDNLHNNVSLSNTSVISNERKSRTKNHLNSTSNTSIMSVRSSSRIQEHEKYKILFTSMDGADALSNKVKTLGGQVVENIEQCTILVTSRIVRTVKFLCCLVKGVPIVNSNWINDSHKKKCFLDPSDYILRDKAGETKYKFNLEKSLRRVQDKPPLLQGYTVMATPNTIPSPADLKGIIEWCGGTLITKAPSGTWPEDSLIVSTPEDKKYWPKQTSRKIIPAINICRVCLQESDWLKDVFEKEQTTPLSNKISECASIKVSRGDGLPASICYDCSVKLLTAYEFRGLCRKSDFKLRRLLSCKTKNSDNIPSFHVIFNDLEPPEIKSEIEIKNNTKRKLDLSDPSTEMLIVEGENTTVIKQIISKTEKKNFVKSLTVPTEETSFADIIEVTVKEDETFQDDASNFDDSSFHEEDTLSKNAFTSDMDIENMKLSAPLPPSKRRKKKDGFTKRSLNSTDSDNWEPEDDFLKEITRPKQKKYELKELDYDLDVPLVPIGPKPKKKPEYKKKQCQVCGKMTTGLKLHMLIHLGIKAFECEYCGKAFTQRIQYQRHLNIHTGNKPFVCSICGKAFADSTSLRCHNVTHTKERKYKCDVCDKAFGYSHTLTAHKRTHTQDRKHICSTCGRPFLTRHGLKKHFRIHTGEKPYKCEFCDKRFSTTGNIQTHRRIHTRERPYKCDVCQMTFAYRSVLNTHIKIHQNLAVIIDCTLSPSKSKDKDKLKKDYKLNKGPVDLDVFAKNLIQETPSAKSILVDNQAYYKDTATKRFNGTVLGYVTPWNGHGYDVARTWANKFSSVSPVWLQLKRQSHRKFVLNGKHDIDAEWVKSVKDHGAENEVQILPRVLFENWTPSDINALSDKREVQTLASFLSDSSINDGFDGFVLEIWSQLLGRVDTEILIESIVAICSHLHSTGQQCILVVPPWHGSNNPELFSRENFEALYPHVTAFSLMTYDFSNPQRPGPNAPAPWVEQCVLHLVPDASAVEKRASILIGMNLYGNAYSPQGGGAILGPQFIDLLGYYKGKLKYDSESKEQFFDVKTPDGRFVVFYPTLHSINVRLELSMQLGTGIALWELGQGLDYFFDLF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -