Pger007128.1
Basic Information
- Insect
- Panorpa germanica
- Gene Symbol
- L
- Assembly
- GCA_963678705.1
- Location
- OY783204.1:26917975-26920973[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 1.7e-05 0.0011 20.4 0.3 1 23 10 32 10 32 0.98 2 15 0.00064 0.041 15.4 0.1 1 23 50 73 50 73 0.92 3 15 0.023 1.5 10.4 0.5 1 23 137 160 137 160 0.93 4 15 8.6 5.6e+02 2.4 0.0 3 23 181 202 179 202 0.87 5 15 0.039 2.5 9.7 0.1 3 23 244 264 243 264 0.99 6 15 0.64 41 5.9 0.3 2 20 277 295 276 298 0.78 7 15 0.00064 0.041 15.4 0.3 3 23 308 329 306 329 0.93 8 15 0.064 4.1 9.1 0.3 1 23 334 357 334 357 0.93 9 15 0.0052 0.34 12.5 1.5 1 23 364 387 364 387 0.98 10 15 0.00078 0.05 15.1 1.7 1 23 431 453 431 454 0.96 11 15 7.1e-05 0.0046 18.4 2.3 2 23 531 553 530 553 0.96 12 15 0.048 3.1 9.5 0.1 1 23 561 583 561 583 0.94 13 15 0.19 12 7.6 0.2 2 23 734 755 733 755 0.94 14 15 0.0055 0.36 12.4 0.0 1 23 765 787 765 787 0.97 15 15 2.2 1.4e+02 4.2 1.7 1 23 794 816 794 816 0.94
Sequence Information
- Coding Sequence
- ATGAAAACCCATGACACTCAAAAGCCCTTCCAATGTACAATATGCAATCGTGGCTACAACACGGCCGCTGCGCTAACATCGCACATGCAAAACCACAAGAAGCAAGCACAAGGTATCCAAGGAGAACGTGGCAACAGTCCAGGATCTTACAGATGCCTTCAATGTGTAGAATCCTTTAAACGTCCCGAAGAATTACAACAGCATGTAGCGGCCACTCACAAAGAGAATCGTGCTACTCCAACAACACCACCAGTCCGCGTTACTTGCATGTACTGCACTAAAGATAGCTTTAATTCTATGGAGCAGCTGCAGCTGCATGTACAAGCTATGCATAGTGCTATTCACAACGAAGTTTCCGCAGCTTTACCAGCAACACCATCTCCTGCAGTAACCCCTACAACGCTGCAACACTCATGCGAGTTATGTACGATGCGTTTCTCAACTATGCAGGGGTTATTGCGACACGCTGCAAGCGCTCATAGACAAGGAAGCCCTCAAAATGGAATCACACCGCCTCCATTACCACCAACACCTTTAATGTGTGGTCCTTGTTCATTACCATTCCCATCTGCAACTCAATTTGCGGAGCATTACCTCCTAATGCATAGTTCTCCATCTCCAGAGCAAGTAACACCGACAGATCTCAGTAAGAAGTCGCACAAACGAAGGAAATTAAGTTCTGATAGTGAAACTCCTTCGCAACCTTACGAAAGACCTGGAACTCTGCTCTGTAATCAATGTGGGGCTGCGTTGCCAGATTTTGAAGCGTTCCGAAAtcatttaaaaacacatttggaGGGGGTACAGAATGCTATATCTTCAGCGCTATCTTGTTCTCAGTGCGGCGCCGTTTTCTCAGATCCTGTCGCCCATGATCGTCATTCAACGTCACATTTCTTATCAACAACTACAGAATTTGGCTGCCAAAGTTGTCAGAAATCTTTTGTTAAACCAGATGAGTTACAAAAACATTTGCTGGATCTTCACGCTCACCATTTGTACCGATGCGCTTTGTGCAAAGAAATGTTCGACTCAAAAGTTTCCATCCAGGTGCACTTTGCTGTTAAACATTCGAATGAATGTAAGGTCTACAGATGCACGACTTGCGTGGCTGAATTTCGGACAGAGCGAGAATTTCGTCAACATGTTAGGTCTAGACATTTGCCTCCTCCAATGCCAAACGGAGTACATCCTCTTCCTTTCTCGATGCCGTTGAGATGTTTGTTCTGCAGGTTGGTGTGTTCAACGGAACTAGAAATGCATTTTCATCTAGCAGCACATGCTCGCCAGTTCCGGTGTCCGTTATGCCCGGAAGCGTTCCACGTGGAGTTTCTTTTGGATAGACATATGCAAACCCATCACACGCAGCCACATCCGGTGATAAATGGAAACACTCCAAAGACAACGCCAAAGCCTTCACCTCCTTCAGGTGGATCAGTAAGAAACCAACCCCAAGACAACAACAACACACGTAATAATTGTGATATTTGTGACCGCGATGACTTCCTTAACGAAACAGAATTAGCAGCTCATCGTAAATTAGTCCACCACCTTAAATCCAACTCGCGTAGTAACGGTGTCGTTAGTCTCCACTGCGCGTATTGTAACGAAAACTTTCGTTCGAGGACAGACTTAGAGAACCATATGAAGACATCTCACAACACGGGGTCCTCAGGAAAGCATAAATGTTTGATCTGTGATGAAATATTTCCTTCAGCTACTGTCTTAGCTGAGCATAAGTTAGCTCATTGTAAAGTTGGTCCAGGAGGTAGATGTGCTCAATGTGGGGCTCTAATGGGGGATGAACGGACCTTCAGAGCGCATCTCAATCAACACTCCGGGTCTGATTTACCATCTCCTTGTCCAGTGTGTCGTCAAACGCTTTCATCTGAACTGGAGGTTGGAATCCATGCTAGGTTTCACTTGAAAGGAGTTGCTGGAGGTCCTGCTGGGTTGCATTGTGCGCTGTGCTTGAAATCCTGTGATCCCAGCGATGCTATTCCAACAGGAGCGGAACTAAATCATGGAATCCCAACAACACAGGTTTGCCGGGATTGCTACGAGCATCATGGAGGAAATAGAGGAACAACAGGAGCAGGGAATACGTGGAGTTGCATACAATGCCAAGCTAATTTCGAGTCGGAACAGGATGTCCGCGCTCACGTGGCTTCCCATTTAAGAGCTGAGAGTAACTCCTTGATGTGTAGGCTGTGCAGACGACAATTGACAACTCCTCTTCAACTCCAGGCGCATTTGATTGAACACACATTCGCAGGATGTGAAGGAAGAGGATTCTCCTGTTACATATGTTCAGCTGTGTTTACAGGAGCACCAGGACTACAACAACATATGTTAGATCATGGTCTAAATGCCAGACCGTATGACTGTTCAAGATGTAGCCTAAAGTTCTTCTTCAGAGCTGAATTAGACAACCACAGTTTTATGCACTTAGAAGAAGAAAGCAAaactttagaaaataaaatagaagcaCATGAAATTACTGTTAAAGATATTAAGGAAGAAGCTGTTGAAATTAAAAAGGAAGAAGAGGAGGAAGATAAAACAGAAGAATATATTGAAGTTGGCTCACCTGTATCTTCAACTACTGTACCTATAAAGAAAGTTAAACTTgaagaaaaggaaaataatgaaatacaaaaaACTAAAGAAGCAATTGAACCATGA
- Protein Sequence
- MKTHDTQKPFQCTICNRGYNTAAALTSHMQNHKKQAQGIQGERGNSPGSYRCLQCVESFKRPEELQQHVAATHKENRATPTTPPVRVTCMYCTKDSFNSMEQLQLHVQAMHSAIHNEVSAALPATPSPAVTPTTLQHSCELCTMRFSTMQGLLRHAASAHRQGSPQNGITPPPLPPTPLMCGPCSLPFPSATQFAEHYLLMHSSPSPEQVTPTDLSKKSHKRRKLSSDSETPSQPYERPGTLLCNQCGAALPDFEAFRNHLKTHLEGVQNAISSALSCSQCGAVFSDPVAHDRHSTSHFLSTTTEFGCQSCQKSFVKPDELQKHLLDLHAHHLYRCALCKEMFDSKVSIQVHFAVKHSNECKVYRCTTCVAEFRTEREFRQHVRSRHLPPPMPNGVHPLPFSMPLRCLFCRLVCSTELEMHFHLAAHARQFRCPLCPEAFHVEFLLDRHMQTHHTQPHPVINGNTPKTTPKPSPPSGGSVRNQPQDNNNTRNNCDICDRDDFLNETELAAHRKLVHHLKSNSRSNGVVSLHCAYCNENFRSRTDLENHMKTSHNTGSSGKHKCLICDEIFPSATVLAEHKLAHCKVGPGGRCAQCGALMGDERTFRAHLNQHSGSDLPSPCPVCRQTLSSELEVGIHARFHLKGVAGGPAGLHCALCLKSCDPSDAIPTGAELNHGIPTTQVCRDCYEHHGGNRGTTGAGNTWSCIQCQANFESEQDVRAHVASHLRAESNSLMCRLCRRQLTTPLQLQAHLIEHTFAGCEGRGFSCYICSAVFTGAPGLQQHMLDHGLNARPYDCSRCSLKFFFRAELDNHSFMHLEEESKTLENKIEAHEITVKDIKEEAVEIKKEEEEEDKTEEYIEVGSPVSSTTVPIKKVKLEEKENNEIQKTKEAIEP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -