Pger026520.1
Basic Information
- Insect
- Panorpa germanica
- Gene Symbol
- -
- Assembly
- GCA_963678705.1
- Location
- OY783215.1:1017106-1019351[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.014 0.92 11.1 1.3 2 23 179 199 178 199 0.96 2 15 6.2 4e+02 2.8 0.5 3 23 203 223 202 223 0.90 3 15 4.7 3e+02 3.2 0.1 2 14 227 239 226 240 0.88 4 15 0.38 24 6.6 6.0 1 23 264 285 264 285 0.92 5 15 2.6 1.7e+02 4.0 1.2 2 23 288 309 288 309 0.93 6 15 0.67 43 5.9 0.1 2 13 313 324 313 326 0.87 7 15 5.9 3.8e+02 2.9 3.9 3 23 352 371 350 371 0.93 8 15 3.3 2.2e+02 3.7 4.6 2 23 374 395 374 395 0.90 9 15 0.024 1.5 10.4 1.7 2 23 399 420 399 420 0.79 10 15 5.6e-06 0.00036 21.8 1.4 3 23 427 448 425 448 0.97 11 15 9.7e-05 0.0063 17.9 1.6 1 23 454 476 454 477 0.95 12 15 3e-06 0.00019 22.7 2.2 1 23 483 505 483 505 0.97 13 15 0.00041 0.026 16.0 1.2 1 23 511 533 511 533 0.96 14 15 5.2e-05 0.0034 18.8 0.8 3 23 541 561 540 561 0.98 15 15 4.2e-06 0.00027 22.2 1.8 1 23 567 589 567 589 0.98
Sequence Information
- Coding Sequence
- ATGGATACTGATATTCAGTCTATTAATATCGAAAAGATAGTTTCGAACTGGGAGAAATTATGCCGAATATGTCTAACGGATCAAGCAATTTTATTTCCTGTTTTTAGTATATATGACTTAGATGAGCAGTACAATATGAGTTTTTGTGAAATGCTAAATACCTGTTCTACCCTTaaaGTGTCGTCTAATGACAATTTCCCGCAATTAATTTGCTCATTATGCATTACACATATGCGCCATGCGctagaattcagaataaaaTGCCAGTCTTCAGAAATGATGTTAACAGAACTCTTTCATAAAAAGAATGATTTAAAAGCAGTCATAAAATGTGAAGTTACTGATGTTACAGAAGTCACTGCAGAAACTGATATAAAATATCACGAAGTGGATGGATATGAATTTACAGCTTTAGCTGAAACAGGATTTGTTACAGATACTGAACAGAAGGAAACCCTTAATACCAAATCAAGCCCTGTATTACCAACAAAGAAAGAAAGTACAGATAGAAAACTCCAGTTCCTACCCGTAACTAGCTGTCCTTTATGTCATGAAACTTACACTTATAGAGAACTAGCAGTGCACAAAAGAACACATCCCAATGCGTGCTGGAAATgcaatattgattttaaaagcGTAGAAGAACACCAAGAGCATGTTAAAGaacataaagaaaaagtgtgctcTGGATgtgaaaaagttttaaaaaacaagGAATTATGTTGTTCACAAACAAAAATTCGTGTAAGAAACAAATTGGATTCTGTATTATCAAAGATTAAAAAAGTTCATACCTGCCCAATATGCCACATATCCTGCAAATACAAAGAACTATTAGCCCATAAGAAAACCCATCCCAATACCTGCTGGAAatgtaacattaattttaacagCGTGGAAGAACACAAAGAGCATGTTAGAGAGCATGAGGAAAATGTGTGCTCTGAATGTGGAAAAGTTGTAAAAAACAAACAGTTATGTTgttctcaaaaaaaaattagtgtAACGAACAAGTTAAGTTCTACATTATCAAGGATTAGAAAAGTTCATCTCTGTCCAATATGCCATGTATCCTGCAAATACATAGAACTTGGAGCCCATAAAAGAACACATCTCAATACATGTTGGAAATGtaacatttgttttaaaagtgCGGAAGAACACAAAGAGCATTTCAAAGAACATGAGGAAAATGTGTGCTCTGAATGTGGAAAAGCTTTCAGAAACAAAAACTTATGTGATCAACACAAAATTGTTCACTCCAAGGACAAATGTTTGTGTACAATTTGCGGAAAGAAATTTAGCGCCCCTGGTAATTTAACTGCTCATCTTCGAAAGAAGCATAATCGAGAGCAAAGATATGAGTGTAATTATTGTGGCAAGAAGTTTATAGATTGGGGTACACGCAGTTATCACATTATGAATCATCACACTTTTGAAAAACCATTTGCTTGTGATATCTGTGATAAGCGTTTTTCAAAAAAGAATCACTTAGTAGAGCACTTGCGTAGTCACTCCAATGAAAAGCCATTTGCATGCACAATGTGTGACGCAAAGTTCAAACGGAAGCCGACCTTAAATATGCACTTGTTTAGACACACAGGCGAAAAGCGAGTCTTTTGTAAAATCTGCAATAAAGGGTTTGTTACAACTAACAGTTTAAAAGTACACATGGTGACGCACACTGGAGAAAAGAACTTTGTTTGTTCTGTGTGCAACAAAGGGTTTTCACAAGCACATGTTCTGCGGACTCACATGAAAACACATTCGGACAATGCTTCTACCAAGAAAACGCAGGCTGAAAAGGCTTCGAGATCTTCTTAA
- Protein Sequence
- MDTDIQSINIEKIVSNWEKLCRICLTDQAILFPVFSIYDLDEQYNMSFCEMLNTCSTLKVSSNDNFPQLICSLCITHMRHALEFRIKCQSSEMMLTELFHKKNDLKAVIKCEVTDVTEVTAETDIKYHEVDGYEFTALAETGFVTDTEQKETLNTKSSPVLPTKKESTDRKLQFLPVTSCPLCHETYTYRELAVHKRTHPNACWKCNIDFKSVEEHQEHVKEHKEKVCSGCEKVLKNKELCCSQTKIRVRNKLDSVLSKIKKVHTCPICHISCKYKELLAHKKTHPNTCWKCNINFNSVEEHKEHVREHEENVCSECGKVVKNKQLCCSQKKISVTNKLSSTLSRIRKVHLCPICHVSCKYIELGAHKRTHLNTCWKCNICFKSAEEHKEHFKEHEENVCSECGKAFRNKNLCDQHKIVHSKDKCLCTICGKKFSAPGNLTAHLRKKHNREQRYECNYCGKKFIDWGTRSYHIMNHHTFEKPFACDICDKRFSKKNHLVEHLRSHSNEKPFACTMCDAKFKRKPTLNMHLFRHTGEKRVFCKICNKGFVTTNSLKVHMVTHTGEKNFVCSVCNKGFSQAHVLRTHMKTHSDNASTKKTQAEKASRSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -