Pger033884.1
Basic Information
- Insect
- Panorpa germanica
- Gene Symbol
- ECU03_0790_1
- Assembly
- GCA_963678705.1
- Location
- OY783222.1:5615602-5617950[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.28 18 7.1 1.0 1 23 273 295 273 299 0.88 2 13 2.5e-05 0.0016 19.8 0.4 1 23 301 325 301 325 0.98 3 13 0.00016 0.01 17.2 0.7 2 23 332 354 332 354 0.95 4 13 0.0045 0.29 12.7 0.1 1 23 360 382 360 382 0.97 5 13 6e-05 0.0039 18.6 1.8 1 23 388 410 388 410 0.96 6 13 1.8e-06 0.00012 23.4 0.5 1 23 416 439 416 439 0.96 7 13 0.13 8.4 8.1 0.4 1 23 445 468 445 468 0.92 8 13 0.0062 0.4 12.2 0.7 2 23 474 495 473 495 0.96 9 13 3.3 2.1e+02 3.7 5.7 2 21 502 521 501 522 0.93 10 13 3.6 2.3e+02 3.5 0.3 3 23 577 597 576 597 0.89 11 13 0.00094 0.061 14.8 4.6 1 23 602 624 602 624 0.98 12 13 0.0021 0.13 13.8 2.0 1 23 630 652 630 652 0.98 13 13 0.0013 0.084 14.4 1.1 2 23 659 680 659 680 0.98
Sequence Information
- Coding Sequence
- atggCTTCTAACGAATATTTGGCAAAAATATGTAGAGTGTGTCTTCAAGAATCTTTACCTATGTGTAGTGTTTTTAAGGAAGCAAAATGTAAtgcaaaagatattaaatttgtGACAGAAGTTGAGGTGTATGAAAACGATGGACTATCCTCATTAATTTGTTCTGAATGTGTTAAAGATGCTGCTGTatcaattacatttaaaaagaaagcCTTGgcgtcaaatttattattaaaaatgattttaaacgccccaaataatattatgaattgTAAGAGCAATAACATCCAAGAAAGATTAGAAGACGGTACTGGTTTATTAGATATATTTTCTGAAGTAGGAATAAAATCAAATGATCTGAATAACGTTTTAGCTAAGTATAATATAGAACACAGTAGACAGCAAAATTTAATTACAGAACTTTTAACGTTATTGAATATAAAACCAAAAATTAAAGCCACTAATCAGGAATCAGAAAAGTTAAAATGTTCCAAAAAACCACAGGTAGACTCTGTAGTTTTTATTGAAGACGTGAATGTAATCAAATTACGTAGTTCTGTTAGAAAGAAAACTTTCCAAGATGAAGAAACTAATAAAGCAAAAATTATTAAGACAGAATCTGAAAGTGAGAGTGATTCCGATGATGATTTTAATGTTCCATCTGATGTAAGTGACGAAGATGCTGTTATAGAACccattattgaatttattaaaccAGTATCTGATGGATCTGTACCGAAGACATCAGCAAAAAAATTGGTAAAACGTACAATTAATGGAAAACCTGTATATCGATCagaaaatacaaagaaaatttATATGTGTGATATTTGCCCATTTAAAGCAGAAGTTAGATTTAAATTAAGTCTACATATGAAACAACATCTAAAAATACATGATTTTAAATGTGATTTTGATGGTTGTGATAAAGCATTTGTTTCTAATGGTTTACTCACGgttcataaaagaaaacatacGCGAGAAAATCTTCCTACCTGTGAattatgcaataaaacatttattacgaaagatatgtatttaaatcaTATGTCTTATGTCCACAGTGGTGTAAAAAGGTATAATTGCCCCAAATGTTCCATGAAATTTGTCAGTGCAGCTGGTTGGCGTGATCATCTTACAATTCACGCTGGGATACGACCGTATCTGTGTCATTTATGCGGCAAAGATTTTAGAATCAAGAAAACATTAAGGGCACATATGATATCCCATCAAACTCAACGAAACTATAACTGCGAAATATGTGGAAAAAGTTTCAAACGTAGAGGGGCGTTATCAAAGCATAACAAAGTTGTAcatgaaaagaataaaaaatattcatgtgATATTTGCAATCAGACTTTCCTTTTTCCTTACTTGAAACAAAATCATGTGGAAACTGCACACAGCGAAGCAGGAAAACGTTGTGCTTTGTGTAGCAGAAATTTTACAACCGATGAAGATTTAAAGGCACATGAACTAAAACACGAAAATCCAAAAGATATGCAATGTCGtcattgtttaaaaatatgtaaaaataaagaagatttAGACAGTCACACTTGTCGGTTAGGgatatttgatatgtttttcTGTCGAAAATGTAATACAACTATAACTGGAGCGGAAAATTTCGATAGCCATAATCATCAAATACATAACATTATAACTTCATCAGTTAATCAAAGTAAAATGATGCAAaatacacaaaaagaattagaaaGAGTTGCATGTGAAACATGTGGTAAGATATTGCAAAAATGGCGAATGGAGAAACATGTAAACAATTATCATAATCCTGATAGATTCCACTGCACAATTTGTGATAAACGAATGAAAACTTTGTCCTCATTCTTAAGACATCAGAGAATGCATACTGGCTACAAACCATTTAAATGCGACATTTGTTCGAAAGAATTTCTTCGGAATGCAAGCTTGCATTATCATATGATGGAACACACTGGAGAACGTCCAGAAAAATGTCGCTATTGCGATGCAGCATTTAAACGGGTCGGTGATTTACATGTGCATGAACGGCGCCACCAGAATCGTATGATAGAAAGCAAACGAAGAGGAAGAGCAAAGATGTCGAAGATACCTGTATCAACAGAACAGTCTTGTGGAGATATAATCCACACAACAAAGAATGATCCAGTCTATGAAGATGGTtggaataataaattatttgttatactgatataa
- Protein Sequence
- MASNEYLAKICRVCLQESLPMCSVFKEAKCNAKDIKFVTEVEVYENDGLSSLICSECVKDAAVSITFKKKALASNLLLKMILNAPNNIMNCKSNNIQERLEDGTGLLDIFSEVGIKSNDLNNVLAKYNIEHSRQQNLITELLTLLNIKPKIKATNQESEKLKCSKKPQVDSVVFIEDVNVIKLRSSVRKKTFQDEETNKAKIIKTESESESDSDDDFNVPSDVSDEDAVIEPIIEFIKPVSDGSVPKTSAKKLVKRTINGKPVYRSENTKKIYMCDICPFKAEVRFKLSLHMKQHLKIHDFKCDFDGCDKAFVSNGLLTVHKRKHTRENLPTCELCNKTFITKDMYLNHMSYVHSGVKRYNCPKCSMKFVSAAGWRDHLTIHAGIRPYLCHLCGKDFRIKKTLRAHMISHQTQRNYNCEICGKSFKRRGALSKHNKVVHEKNKKYSCDICNQTFLFPYLKQNHVETAHSEAGKRCALCSRNFTTDEDLKAHELKHENPKDMQCRHCLKICKNKEDLDSHTCRLGIFDMFFCRKCNTTITGAENFDSHNHQIHNIITSSVNQSKMMQNTQKELERVACETCGKILQKWRMEKHVNNYHNPDRFHCTICDKRMKTLSSFLRHQRMHTGYKPFKCDICSKEFLRNASLHYHMMEHTGERPEKCRYCDAAFKRVGDLHVHERRHQNRMIESKRRGRAKMSKIPVSTEQSCGDIIHTTKNDPVYEDGWNNKLFVILI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -