Basic Information

Insect: Panorpa germanica
Gene Symbol: -
Assembly: GCA_963678705.1
Location: OY783215.1:818590-820703[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 3.7 2.4e+02 3.5 5.2 2 23 170 190 169 190 0.87

2 15 1 66 5.3 0.5 3 23 194 214 193 214 0.89

3 15 0.49 31 6.3 0.1 2 14 218 230 217 231 0.88

4 15 1.3 81 5.0 4.4 1 23 255 276 255 276 0.95

5 15 5.3 3.4e+02 3.0 0.3 2 12 279 289 279 296 0.84

6 15 0.55 35 6.1 0.1 2 14 304 316 304 317 0.87

7 15 1.3 81 5.0 4.4 1 23 341 362 341 362 0.95

8 15 0.71 46 5.8 2.6 2 23 365 386 365 386 0.91

9 15 0.0016 0.11 14.1 3.1 2 23 390 411 390 411 0.97

10 15 1e-06 6.5e-05 24.2 2.8 3 23 418 438 416 438 0.97

11 15 0.00016 0.011 17.2 1.5 1 23 444 467 444 467 0.97

12 15 1.5e-06 9.7e-05 23.6 1.0 1 23 473 495 473 495 0.97

13 15 0.00025 0.016 16.6 0.5 2 23 502 523 501 523 0.96

14 15 1.8e-05 0.0011 20.3 0.9 3 23 531 551 530 551 0.98

15 15 3.9e-06 0.00025 22.3 1.8 1 23 557 579 557 579 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	3.7	2.4e+02	3.5	5.2	2	23	170	190	169	190	0.87
2	15	1	66	5.3	0.5	3	23	194	214	193	214	0.89
3	15	0.49	31	6.3	0.1	2	14	218	230	217	231	0.88
4	15	1.3	81	5.0	4.4	1	23	255	276	255	276	0.95
5	15	5.3	3.4e+02	3.0	0.3	2	12	279	289	279	296	0.84
6	15	0.55	35	6.1	0.1	2	14	304	316	304	317	0.87
7	15	1.3	81	5.0	4.4	1	23	341	362	341	362	0.95
8	15	0.71	46	5.8	2.6	2	23	365	386	365	386	0.91
9	15	0.0016	0.11	14.1	3.1	2	23	390	411	390	411	0.97
10	15	1e-06	6.5e-05	24.2	2.8	3	23	418	438	416	438	0.97
11	15	0.00016	0.011	17.2	1.5	1	23	444	467	444	467	0.97
12	15	1.5e-06	9.7e-05	23.6	1.0	1	23	473	495	473	495	0.97
13	15	0.00025	0.016	16.6	0.5	2	23	502	523	501	523	0.96
14	15	1.8e-05	0.0011	20.3	0.9	3	23	531	551	530	551	0.98
15	15	3.9e-06	0.00025	22.3	1.8	1	23	557	579	557	579	0.98

Sequence Information

Coding Sequence: ATGGATAGTAATATTAATGTTGAAAATATAGTTTCAGACTGGAACAAATTGTGCCGAATATGTTTAACGGATCAAACAATTTTATTTCCTGTTTTCAGTTTGGTTGAGTTAGATGAGCAGTACAATATGAGTTTTTGTGAAATACTTAATACCTGCTCGTCCCTTaaaGTGTCGTCTAATGACAATTTTCCGCAATTAATTTGCTCATTATGCATTACACATATGCGCCACGCActagaatttagaataaaatgcCAATCTTCAGAAATGATGTTAACAGATATCTTTCATAAAACAAACGATTTAAAGACGATCATAAAATGCGAAGAAACGGATTTTACAGAAAGCAACGCAGAACCTGATACAAAATATCACGAAGAGGACGGTTATAAGTTTACAGGTTTTGTTCCTGTGTCTGAAGAAAAGGAAACCCAAAATACCACATCAAACCCATTACTAACTAAGAAAGAAACTACAGATAGAAAATGTCAGTACCTACCTGTAACTACCTGTACTTTGTGTCATGAAACTTGCACTTATAGGGAACTACTAACGCATAAAATGTCACATCCCAATGCGTGCTGGAAATGTAACATTGATTTTAAAAGCGTAGAAGAATACAAAGAGCATGATAAAAAACATAAGGAAAAAGTATGCTCCGAATGtggaaaagttttaaaaaacaaagaattgTGTTGTTCACAAAAAGAAAATCCCGTGAGAAAAAAAGTAAATGTTACATTATCGAGGATTAAAAAAGTGCATATCTGCCCAATATGCCATGTATCCTGCAAATACAGAGAACTAGGAGCCCATAAGAGAACGCATCTTAATACATGTTGGAAATGTAACATTAGTTTTAACAGCGTAGAAGAACACAAAGAGCATGATAAAGAACATGAGGAAAATGTATGCTCTGAATGtggaaaagttttaaaaaacaagGAACTCTGTTGTCCACAAAAAGAAAATTCCGTGAAAAACAAAGTAAATGTTACattatctagaattaaaaaagtgCATATCTGTCCAATATGCCATGTATCCTGCAAATACAGAGAACTAGGAGCCCATAAAAGAACACATCTCAATACATGTTGGAAATGTAACACTAGTTTTAACAACGCTGAAGAACACAAAGAGCATTTCAAAGAACATGAGGAAAATGTTTGTTCTGAATGtggaaaagtttttaaaaacaaagttttgTGTACTCAACACAAAAATACCCACACCATGGATAAATGTTTGTGTACAATTTGTGGAAAGAAATTCAGTGAACGGTCTAATTTAAACGCACATCTTCGTAGGCATACTCAAGAGAAAAGATATGAGTGTAGTTATTGTGGCAAAAAGTTTGCAGAATGGACTACGCGCAGGTATCACATTAGAAACTATCACACTTTTGAGAAACCATTTGCTTGTGATATTTGTGATAAACGTTTTGCAGATAAAAGACACTTAGTAGAACACTTGCGTTCTCATAGCAATGAAAAACCGGTTCCTTGTACAATATGTGACTCAAAGTTCAAAGTTAAGTCGGCATTAACTCTTCACATGTTTAAACACACGGGAGAAAAACGAGTGTTTTGTAAAGTCTGCAATAAAGGCTTTGTTACGAATTATAGTTTAAAACTACACATGGTGACGCACACTGGAGAAAAGAACTTTGTTTGTTCTGTGTGCAACAAAGGGTTTTCACAAGCACATGTTCTGCGGACTCATATGAAAACACACAAGTAG
Protein Sequence: MDSNINVENIVSDWNKLCRICLTDQTILFPVFSLVELDEQYNMSFCEILNTCSSLKVSSNDNFPQLICSLCITHMRHALEFRIKCQSSEMMLTDIFHKTNDLKTIIKCEETDFTESNAEPDTKYHEEDGYKFTGFVPVSEEKETQNTTSNPLLTKKETTDRKCQYLPVTTCTLCHETCTYRELLTHKMSHPNACWKCNIDFKSVEEYKEHDKKHKEKVCSECGKVLKNKELCCSQKENPVRKKVNVTLSRIKKVHICPICHVSCKYRELGAHKRTHLNTCWKCNISFNSVEEHKEHDKEHEENVCSECGKVLKNKELCCPQKENSVKNKVNVTLSRIKKVHICPICHVSCKYRELGAHKRTHLNTCWKCNTSFNNAEEHKEHFKEHEENVCSECGKVFKNKVLCTQHKNTHTMDKCLCTICGKKFSERSNLNAHLRRHTQEKRYECSYCGKKFAEWTTRRYHIRNYHTFEKPFACDICDKRFADKRHLVEHLRSHSNEKPVPCTICDSKFKVKSALTLHMFKHTGEKRVFCKVCNKGFVTNYSLKLHMVTHTGEKNFVCSVCNKGFSQAHVLRTHMKTHK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01137409;
90% Identity: -
80% Identity: -