Pger033442.1
Basic Information
- Insect
- Panorpa germanica
- Gene Symbol
- -
- Assembly
- GCA_963678705.1
- Location
- OY783221.1:13754059-13756802[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.0096 0.62 11.7 0.9 3 23 56 77 55 77 0.95 2 15 0.4 26 6.6 0.3 1 23 131 153 131 153 0.95 3 15 0.74 48 5.7 4.9 2 23 202 224 201 224 0.96 4 15 0.24 15 7.3 7.3 2 23 265 289 264 289 0.93 5 15 4e-05 0.0026 19.1 3.3 2 23 300 322 299 322 0.97 6 15 0.17 11 7.7 0.9 1 23 330 353 330 353 0.93 7 15 0.0004 0.026 16.0 2.1 1 23 359 381 359 381 0.97 8 15 6.2e-05 0.004 18.5 3.0 1 23 386 408 386 408 0.97 9 15 1.8e-06 0.00012 23.4 2.6 1 23 413 435 413 435 0.98 10 15 0.017 1.1 10.9 2.9 1 23 441 463 441 463 0.98 11 15 2.9e-06 0.00019 22.7 1.3 3 23 471 491 470 491 0.98 12 15 1.6e-05 0.001 20.4 0.4 2 23 498 519 498 519 0.97 13 15 0.02 1.3 10.7 0.6 5 23 528 547 527 547 0.90 14 15 9.1e-06 0.00059 21.2 1.4 1 23 558 580 558 580 0.99 15 15 1.7 1.1e+02 4.6 4.3 2 23 587 609 586 609 0.95
Sequence Information
- Coding Sequence
- ATGGAGGAAAATAACATTGAGTTCGATATGAACGGATTTCGGGATGTAAATTACAGTGAAATACAATGTGTAGTTTCAGATACCAGTGATGAAGATTTATCAGACAATGAAAAAAGCATAGAAGGACAATTAGACACAAGTATAAAAGTTCCACTGGAaagaatttgtgatatatgtACATGTGTCTTCGATAAAAAAGATTTGTATATTAAACATTTGGCTCGATTACATGGACTTAAGTTAAAACCTTGCAAATTGGATGAAAAAATGAACGTAGAGCAGGATGAAGTTCATATTACTGTAACTGACAACGAAAATGTTGATAATGATAAACTAGCAATTGtatctaaatatattaaaatggtaAATAGTTTTCATAACGTACAGacatttttgtgtttaatttgtGATGTGGAAATACAATCCAAATCTGCAGCTCGACGTCATTTTCGAACACATGATATATGGAGTAGCTCCAAATGTGATAGTATTGATTTAGGATATAAATGTAGATTTTGTTCCAATTTATTTTGGAgcattgaaaaaagaaatcgaCACCAAGTTGTTCGCCATCTTACAGTAGAGGCAAGACCATTGTTTATGAAATGCTATGAATGTACTGCTATCTACAGCAGCAGAACTTGTCTTTTTCGGCACTTTCATACAGTCCATTCAAAGAAAATCAGTTTTAGAAGTAACTCTTACAAATGCCTTCATTGTTGCAAATTATTCCCAAATTTATCACTAATACGTGAGCATTTCAAAAATGATCACCCACGATCTTTTTCCCTTTATTGCAGTTTATCACATTGTCGTACAAAATGTAATACAAAGAAAAATTTACGGCAACATTATAAACGCCTGCATAAACCAGATAGGCAACAAGATATACCTAAGACATGTAATTTATGTAACAAAACATTCAAAAATAATCGTTCTTTTGTACTTCATATGCGAATGAAGCATGACCGAACTACTCGGTTGGGATTCAAATGTCGATTGTGTGAAGAACGTTTTAATACTGCGCTTGAGAGGAAACAGCATACGGACATTCAACATACTGGGCTACCAACGTTCTTCTGTAAACTGTGCGATAAGGCTTTTCACAGCAAATCTGGACTTTCAGGTCACGTGCAGACGCATAAACAGAGAGTTCACGAATGTCCTTATTGCAAAAAGACTTTCAATcgCAGAGACTCGTACATGGAACATAAATTAATCCACATTGGGCCTCGTCATAAATGTTTACAGTGTGAGAAAGAATTTGTTcagaaatcaaatttaattcgtCATGTTCGAACTCATACTGGAGATAAACCATATTCTTGCAGATACTGTTTCAAAACTTTCGCTGATAAAGGCGCCTGCAACTCACATGAGAgAGTGCATACAAGAGAAGAAGTAAGTGCTTGTCCATATTGTGGCCAAAgtttttctaaaaaacaaaaactgaaaTATCACATCCGAAAACACACTGGAGAAGGTCTTGAAGTTTGCACGATCTGCGATAAGATTTTTACGAATGGTTATTCTTTAAAAaaacatcAAGAAATTCACGATCGGGATACTCAATATTTGTGCGAGTGCGGAAAAGCTTTTTCTAGTGAAGTCTATCTTCATCGGCATGCTATTAATACACATGGACATCCAGATGCAccaaaagcatttaaatttcAATGTTCAGTTTGTCAAAAGGGATATAACTCTCAATCAAAGCTAAAGGATCACTTGATGACTCATTCCACGGAAAAGCATATCAAATGTTTGCTATGCAATTTTGCTTGTCAAACAAAGAAGACCGTTCGAAGACATCTATCTAAGAAACATCTTGTTCCAGAGAGCCAACATTACAACTGTTTTGTTGTCCTCACACCTTTACAGGCTGGAGCCCCGCCATTACCAGTTGCAGaAGTGGATGATAAGTCTTCTGTGCAAACCGAAATTTTACTACACCAAATGGAGCGACCATTAAATTTGTCTGAACTAATTCATAAAGATTATGAATACCTTGCCGCAGCAAATAATTCAGAGTTGCCCCAACAAGATATTAATAGCACCTCTGTTAAAATTGAGCTCGTGGATAACGACTAA
- Protein Sequence
- MEENNIEFDMNGFRDVNYSEIQCVVSDTSDEDLSDNEKSIEGQLDTSIKVPLERICDICTCVFDKKDLYIKHLARLHGLKLKPCKLDEKMNVEQDEVHITVTDNENVDNDKLAIVSKYIKMVNSFHNVQTFLCLICDVEIQSKSAARRHFRTHDIWSSSKCDSIDLGYKCRFCSNLFWSIEKRNRHQVVRHLTVEARPLFMKCYECTAIYSSRTCLFRHFHTVHSKKISFRSNSYKCLHCCKLFPNLSLIREHFKNDHPRSFSLYCSLSHCRTKCNTKKNLRQHYKRLHKPDRQQDIPKTCNLCNKTFKNNRSFVLHMRMKHDRTTRLGFKCRLCEERFNTALERKQHTDIQHTGLPTFFCKLCDKAFHSKSGLSGHVQTHKQRVHECPYCKKTFNRRDSYMEHKLIHIGPRHKCLQCEKEFVQKSNLIRHVRTHTGDKPYSCRYCFKTFADKGACNSHERVHTREEVSACPYCGQSFSKKQKLKYHIRKHTGEGLEVCTICDKIFTNGYSLKKHQEIHDRDTQYLCECGKAFSSEVYLHRHAINTHGHPDAPKAFKFQCSVCQKGYNSQSKLKDHLMTHSTEKHIKCLLCNFACQTKKTVRRHLSKKHLVPESQHYNCFVVLTPLQAGAPPLPVAEVDDKSSVQTEILLHQMERPLNLSELIHKDYEYLAAANNSELPQQDINSTSVKIELVDND
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -