Basic Information

Insect: Panorpa germanica
Gene Symbol: -
Assembly: GCA_963678705.1
Location: OY783206.1:27173413-27177856[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.099 6.4 8.5 0.1 1 21 76 96 76 97 0.93

2 14 3.3 2.1e+02 3.7 0.5 2 21 210 229 209 230 0.93

3 14 0.034 2.2 9.9 0.1 2 16 268 282 268 284 0.87

4 14 0.069 4.4 9.0 0.7 2 22 345 365 344 365 0.93

5 14 5.4e-05 0.0035 18.7 1.3 1 23 392 414 392 414 0.96

6 14 6.3e-05 0.0041 18.5 4.2 1 23 420 442 420 442 0.97

7 14 5.1e-05 0.0033 18.8 3.7 1 23 448 470 448 470 0.96

8 14 0.0071 0.46 12.1 0.5 5 23 477 495 475 495 0.95

9 14 1e-05 0.00066 21.0 3.0 1 23 501 523 501 523 0.98

10 14 0.0013 0.085 14.4 2.6 1 23 529 551 529 551 0.98

11 14 0.96 62 5.4 2.1 3 23 575 595 573 595 0.94

12 14 0.0088 0.57 11.8 10.7 1 23 601 623 601 623 0.99

13 14 5.8e-06 0.00038 21.8 0.9 1 23 629 651 629 651 0.97

14 14 0.0079 0.51 11.9 3.1 1 23 657 680 657 680 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.099	6.4	8.5	0.1	1	21	76	96	76	97	0.93
2	14	3.3	2.1e+02	3.7	0.5	2	21	210	229	209	230	0.93
3	14	0.034	2.2	9.9	0.1	2	16	268	282	268	284	0.87
4	14	0.069	4.4	9.0	0.7	2	22	345	365	344	365	0.93
5	14	5.4e-05	0.0035	18.7	1.3	1	23	392	414	392	414	0.96
6	14	6.3e-05	0.0041	18.5	4.2	1	23	420	442	420	442	0.97
7	14	5.1e-05	0.0033	18.8	3.7	1	23	448	470	448	470	0.96
8	14	0.0071	0.46	12.1	0.5	5	23	477	495	475	495	0.95
9	14	1e-05	0.00066	21.0	3.0	1	23	501	523	501	523	0.98
10	14	0.0013	0.085	14.4	2.6	1	23	529	551	529	551	0.98
11	14	0.96	62	5.4	2.1	3	23	575	595	573	595	0.94
12	14	0.0088	0.57	11.8	10.7	1	23	601	623	601	623	0.99
13	14	5.8e-06	0.00038	21.8	0.9	1	23	629	651	629	651	0.97
14	14	0.0079	0.51	11.9	3.1	1	23	657	680	657	680	0.94

Sequence Information

Coding Sequence: ATGGCATTGAACAGAAGAAATCAAATGAAATTAGAGGTTGATCCTCTAAAAGATACAATGGAAATGGAACAGCAATTGAGCTtgaatataaaaacagaaacaGACGTCGACGAGTGCGCTGTTGAGCAGATATTTCTCGTTGAAATCAAAAAAGAATTCGAAGAAACTTCGTCAGATTGGTCACATgataacattaaatatgaacccgACGTTAATTCAACGGATTTTATATGTGAAAATTGTGGCGATGTCTTCCAAAACTCCAACAAATTGTTGGAGCACCAAGAGATGTCATCATATTGCAACATACGTATAGAAGGAAcaaaagatttaattattaaggaACGACGTggacaattatatttaaatcagGACAATGAATTATCTAGGAAATCATTCTACAACACGACAGAAGGTGTAAAACATTCAAAAACAAATGCAGCGGAAATGGAAAACAGGGATGTCAAGGCGGAAGTAATCCTGGACAATAAAAATGACACTAGAATGGAAACTGAATTTATTTGTGTTGAGGAAGTTCAGTATCATGCAGGACCGGAAACTCTACAACAAATACCCTTTGATAACTATTTCTTAAAAGACAAAGAAGCGGGGCCCTCGACAGCTGTGTACTGTGTCACCTGCTCAACTTATTGCAAAGACATGGAGACTTTAACGGAGCATCTGAAAGCCAATATTGAGTGCCAGCTATTTGAAAATGGGGACCAGAATGTTAATACAAAAAATGCTATAGAACATTATACCGCTAAAGTAAATCCTTTTAAGTCCTATGTTGAACGTAATGTGTGTGATATTTGCAACAAGTCTTTTCCTAATAAAGCGGAAATGGAAAACATGGATTTCAAACTGGAAGCTGATGTAATAATACTGGACAACAAGAAtgacattaaaatagaaactgaaGTGACCCGTGTTGATGAAGTGACTGTCAATGAGATGGGTTCAGAAAATCCACAAGACGAAGTGTTTGATAACTATCTCAAACAAGAGGATTCGGGGTCCTCGGCAGGTGTGTACTGTGACACCTGCTCCACTTACTGCAAAGATGCAGAGACATTGGAGAAACATCAGGAAACCAACCCCGattgtaaacaatttgataatgTGGCCACGCCCCAAATGGGCAGCCTTGAACTGCATACAGGGATAAAACCATATGCATGTGAAGTTTGCAATAAGTCTTTTGATCGTAGTAGTAACTTTTACTATCATAGGCTTGAGCACACGGGAGGGAAGCTGTACTTTTGTAATATTTGCGACAAATCTTTTGATCATAGCAGTAGCTACTATAATCATACGCGTGAGCACACGGGAAAGAAGCCATATTCATGCGACATTTGCGACAAGTCTTTCAATCATAGCAGTAGTTTTTATAATCACAGGAGTGAGCATACTGAAACAAATCCGTACTTATGCGATAAGTCCTATGCTCATAAGGGTGAACTTAGTAAACACAAATTTACGCATACAGAAGTGAAGCCTTATttttgtgacatttgtaacaagtCTTTTAATCAAAGCAGTAGCCTTTATTATCACAAGCGTATGCACACACGGAAAAAGCTGTATTCATGTTACGTGTGCAACAAATCTTTCATTGATAGCAATAGTTTTTATTATCACAAACTTACACACACGTCATTTATTCGAAAAAGTAGTCTTCCTGGTCACAAACAAGTGCAGACGGAGTTAAAGACGCATTTATGTGATGTTTGCAATGAGTCTTTTAATTGTATGATTACTTTAAGTGAGCATATACTTACTCACGCCCCAGACAAGCCGTATTCATGTGGCATTTGCCATAAGTCTTTTTTTCATAGAAGCAGCTTCCATTATCACAAGCGTACACACACAGGAGAGAAACCGTATTCATGTGATCTTTGCGACAAGTCTTTTACTCAAAATAGTAGCCTTGTACTTCATAAGCAACTGCATACTGGTGTGAAGCCCCACTCATGTGACATCTGCTACAAGTCTTTTCTTTATAAGAAAAACCTGGAACGACATAAACTTAATGTACATAGACCACCTTTATCGTTTCGTGCTTACAGCCAGTTTTCGTAG
Protein Sequence: MALNRRNQMKLEVDPLKDTMEMEQQLSLNIKTETDVDECAVEQIFLVEIKKEFEETSSDWSHDNIKYEPDVNSTDFICENCGDVFQNSNKLLEHQEMSSYCNIRIEGTKDLIIKERRGQLYLNQDNELSRKSFYNTTEGVKHSKTNAAEMENRDVKAEVILDNKNDTRMETEFICVEEVQYHAGPETLQQIPFDNYFLKDKEAGPSTAVYCVTCSTYCKDMETLTEHLKANIECQLFENGDQNVNTKNAIEHYTAKVNPFKSYVERNVCDICNKSFPNKAEMENMDFKLEADVIILDNKNDIKIETEVTRVDEVTVNEMGSENPQDEVFDNYLKQEDSGSSAGVYCDTCSTYCKDAETLEKHQETNPDCKQFDNVATPQMGSLELHTGIKPYACEVCNKSFDRSSNFYYHRLEHTGGKLYFCNICDKSFDHSSSYYNHTREHTGKKPYSCDICDKSFNHSSSFYNHRSEHTETNPYLCDKSYAHKGELSKHKFTHTEVKPYFCDICNKSFNQSSSLYYHKRMHTRKKLYSCYVCNKSFIDSNSFYYHKLTHTSFIRKSSLPGHKQVQTELKTHLCDVCNESFNCMITLSEHILTHAPDKPYSCGICHKSFFHRSSFHYHKRTHTGEKPYSCDLCDKSFTQNSSLVLHKQLHTGVKPHSCDICYKSFLYKKNLERHKLNVHRPPLSFRAYSQFS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -