Pger027435.1
Basic Information
- Insect
- Panorpa germanica
- Gene Symbol
- -
- Assembly
- GCA_963678705.1
- Location
- OY783216.1:482518-486586[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 4 2.6e+02 3.4 1.4 3 21 61 79 59 80 0.91 2 17 6.4e-05 0.0042 18.5 2.7 1 23 97 119 97 119 0.98 3 17 0.15 9.6 7.9 0.4 1 22 125 146 125 148 0.86 4 17 0.086 5.6 8.7 0.4 2 23 152 174 151 174 0.96 5 17 0.00033 0.022 16.2 0.2 2 21 183 202 182 203 0.94 6 17 0.0018 0.12 13.9 0.4 2 23 212 233 211 233 0.95 7 17 0.03 2 10.1 2.1 3 23 241 261 239 261 0.96 8 17 0.0012 0.077 14.5 0.3 1 23 267 289 267 289 0.96 9 17 0.58 37 6.1 0.4 1 21 295 315 295 316 0.92 10 17 0.13 8.6 8.1 2.7 1 23 818 840 818 841 0.95 11 17 0.74 48 5.7 2.0 1 23 865 887 865 887 0.95 12 17 0.0001 0.0066 17.9 0.1 3 23 924 945 922 945 0.95 13 17 0.0015 0.1 14.2 0.1 1 21 955 975 955 976 0.92 14 17 2.8e-05 0.0018 19.6 0.9 1 23 984 1006 984 1006 0.96 15 17 2.3e-05 0.0015 19.9 1.5 3 23 1014 1034 1012 1034 0.96 16 17 0.00017 0.011 17.2 0.6 1 23 1040 1062 1040 1062 0.97 17 17 0.28 18 7.0 6.1 3 23 1070 1090 1068 1090 0.96
Sequence Information
- Coding Sequence
- ATGGCAAAGACAACTGATAACAATggtgataaaattaaatataatggtGATTCTTCAACTAGTAATTCAGGCAGCAGCAGTTCAGAAGATTCAGGTTCTGAAAACAGCGATAGCTCGAGTTGTAGTTCTAGCACTGATAATAAAAAGTCTAAGAAAATATCTGGTAGAAAGCCGCAGAACTGTAGACATTGTAACAAACAATATTTGAATAGCGGAGGATTGTATAAACATGAAAAGCGGTGTCAAAAAAACGAAAATTCTAAAGCTCCAAAAAGTGAAGCAGGAACGTTTACATGCAAGgacTGTAACCAAAGCTTCCGATATCTAACGGGGCTTACACGACATGAAAAACGGCACACCGGCGAAGGAGGCTTTAGTTGCAAACAATGTGGAGCTAAATTTCGTTCAGATGCCGAACGGACCGTACACAAGGAGGCGAACCATAGAGTTATCAAATGCCAGCTTTGCGATGATAAATTCGACACAGACGAAGACTTTTTCAAACACATAAACGTTATGCACGATGGCAAAGATCGAGAGTACACAGTTTGCAGCGATTGTGGACAACAGTTTAGAACTAATATTCAACTCAAATATCATATGGAGTCAAAATGCGGTACACAAAAACAGTGGATTTGTGAGGAATGTAATTCGCGTTTTATGACAAAGAGTACATTAAGAGCTCATAAATTAATTCACGAAGGATTAAAGAAACATTTGTGTAATTTCTGTGGTAATAGTTTTTTGTCGAAAGGTCAACTTAAAGTTCATGAACGAAGTCATACCGGAGAAAAGCCTTTCATATGTCAGGTCTGTAACAAGGGGTTCGCTTACCGAGAAAGTTTAGTAACACATACATCTCTACATACAGGAATTAAGCCATATTTATGTGAAGGATGTGGCTCAAGATTTTCTTGCATTGGAAATCTAATAAAACATAGAAAAGCTAGGCCAGATTCCTGTGGATTACCACAATTTTCAACAAATACAAAAGTTGCTCCTAGAGCCAGTGCCAaacGTACCCGCGCGAGAAGACCCAGAGGACCTTACAAAAAAGATCAGCTCGTCATTTCAGTATTTCCTGAGTTTCAATCTGAAAGCAATACTTCTGATTATCAACCAAATAACGCATCACTTCTTGAAACTTCACAAGTACTTCCTCGGATAGAAATGCAACATGAAAATGGCATAATGGGTATAAATGATATCAACTCCAGCCCATTGGATATGCGAAACCAtgaaacaaacaattttaatattgcAAAAATCACTAACTCTCCTCAACATGTCGTGAATTATAACAATCAATATCCCAACAATGCAAACTATCAGCCTTCGTATGGGTTTAATGTCAATAATGGTGTATTTCCACCAAGTATGCATTATGGAGAACAAATTCGAGATTGGACAGCATATCCAGTGTTTCAAAATCAGTCAAATCAAAATTCGTACCCAATCTATGACCAATACAACATGAACAGTGCTCAGCCCAGTGTTATAATGCCGCCACAAAATTATTCTAATACTAAAAATGTTCCAGAAGAAATTAAATCGGATCCAGAAGTTATAGAGACAATAAAACCAGAATTGTCGGTAGATTTAAGTGAAGCAATAAATGGTTGTAGCAGTAATGCTCTCGTAGATGGCACAACTAAGTGTGAGGAAATCGATGTAGGAGATGGCGAAAGACAATTATGTTTTGAAGAATTAGTAAAAGTAAAACTAGAAGAAGGTCAATCAATAATTCATAAtgataattcattaaaaaaggaaaaaaagaaaaagcatAAACTTGGaaaacataaaaagaaaaaaaaagaaagaaaatccaaatcaaaaagtaaaaaaaagaaacatgaaATTGATGAACAAGAAATTAAAGATTTGGACATAAAAGATATACCCGCTATTAAAGAAGAGGAAACAAAAGATACTGAAATAGAAGATAAAGTTGCTGAAATTATCGAAGCGCCTATGGACACTCCAGGATTGTTGGACTCGGATTTTGCAGATAATGATTTCCAACAAAGTAGCGGCAGTGAGTGGAACGCagaattaaattcaaaaaagcaaaatttaaaacggaaaacagaaaaaaagaaaaatagttcGAGACACAATAAATGGCGTAAAACTGTATATACTAGTTCCGATGATTCTGACGAAGATGAGCCAATTTCAAGAAAAACACGAAAAAGAGGTAGAAAACCTCGAACTgcaaataaacaacaaataaaatgcgAAGAACTAAAAGCAGAAATTATAGAAGATGAATTAGAGCCAGGGGAAGTTAGACCGGAAGAAATGAAAGTTACTGATGTAGACGATTCTGATGGAGGTGCTGACCATATAGATGAATCTCCAGATTCAGATGTAAAAGATGAGGAGGAAGATTTAACCATGCCTCCGGATTTGCATTATCCCACAGAAAGTAAAACTGGACGGCCTTTATTCTCAtgtaaattttgtatgaaagAATATTCATATGTTTCTGCTCTTGCAAAACATGAAAAGTCACACCATAATCTTGAAGGCGCTGTTCTCGAACAAAAACGCAATAAAACTCCaaaaaacaaacataataaGCAAACGTTCAactgtaaatattgttttaaaaaatatttaaatctttcggttttaataaaacatgaaaAAGATCATGGTCCAGAGGGTAAACTGCTGGTGCGTTGCTCGTGTTGTCggaaatattttgaaacaaaGGAACAGTGCCTGGCTCATCAAGCCCGAGTCCATTATGATCGCCTAGCTTGCCAACAATGCAGCAAAATCTTTAAGGAACCTGATAATCTCACAGCGCATATTAAATATGCTCACAGTGGTGGATCACTAAAGAAATACACTTACATGTGTCCCACTTGtgGAAAAAATTTTACTTCAAAACTTGCTTTGGGAGATCATGAACGGAGTAATTGTGGTAGAAATCCAATACATATTTGCGATGTGTGCCAGAAGTCTTACACATCAGCAGCTTCCCTAAAGACTCATATGACTGTCCATAGTGGGGTGCTCCCTCATCTCTGCAATTATTGCGGAAAGGCTTTTCGAACACAAGGACAAGTTAAAGTGCATGAGCGCAGCCATAGTGGCGAGAAACCATTTAAATGTGAATTCTGTCCAAAGGCATTTGCTTATCGGGAAAGTCTTATCACGCATCGATCTCTACATACTGGTATAAAAAAACACTTATGCCATGGATGTGGATCTAGATTTTCATGTATTTCAAATCTTCAAGCGCATAGGAAGTCTCATAAAAGTACTTGTGGTCTAGAATCCAAAAATCAACTTTCCCTCTCTTCCTTTCCCTCCGACTCCGAACAAGTGTTCACGTAA
- Protein Sequence
- MAKTTDNNGDKIKYNGDSSTSNSGSSSSEDSGSENSDSSSCSSSTDNKKSKKISGRKPQNCRHCNKQYLNSGGLYKHEKRCQKNENSKAPKSEAGTFTCKDCNQSFRYLTGLTRHEKRHTGEGGFSCKQCGAKFRSDAERTVHKEANHRVIKCQLCDDKFDTDEDFFKHINVMHDGKDREYTVCSDCGQQFRTNIQLKYHMESKCGTQKQWICEECNSRFMTKSTLRAHKLIHEGLKKHLCNFCGNSFLSKGQLKVHERSHTGEKPFICQVCNKGFAYRESLVTHTSLHTGIKPYLCEGCGSRFSCIGNLIKHRKARPDSCGLPQFSTNTKVAPRASAKRTRARRPRGPYKKDQLVISVFPEFQSESNTSDYQPNNASLLETSQVLPRIEMQHENGIMGINDINSSPLDMRNHETNNFNIAKITNSPQHVVNYNNQYPNNANYQPSYGFNVNNGVFPPSMHYGEQIRDWTAYPVFQNQSNQNSYPIYDQYNMNSAQPSVIMPPQNYSNTKNVPEEIKSDPEVIETIKPELSVDLSEAINGCSSNALVDGTTKCEEIDVGDGERQLCFEELVKVKLEEGQSIIHNDNSLKKEKKKKHKLGKHKKKKKERKSKSKSKKKKHEIDEQEIKDLDIKDIPAIKEEETKDTEIEDKVAEIIEAPMDTPGLLDSDFADNDFQQSSGSEWNAELNSKKQNLKRKTEKKKNSSRHNKWRKTVYTSSDDSDEDEPISRKTRKRGRKPRTANKQQIKCEELKAEIIEDELEPGEVRPEEMKVTDVDDSDGGADHIDESPDSDVKDEEEDLTMPPDLHYPTESKTGRPLFSCKFCMKEYSYVSALAKHEKSHHNLEGAVLEQKRNKTPKNKHNKQTFNCKYCFKKYLNLSVLIKHEKDHGPEGKLLVRCSCCRKYFETKEQCLAHQARVHYDRLACQQCSKIFKEPDNLTAHIKYAHSGGSLKKYTYMCPTCGKNFTSKLALGDHERSNCGRNPIHICDVCQKSYTSAASLKTHMTVHSGVLPHLCNYCGKAFRTQGQVKVHERSHSGEKPFKCEFCPKAFAYRESLITHRSLHTGIKKHLCHGCGSRFSCISNLQAHRKSHKSTCGLESKNQLSLSSFPSDSEQVFT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -