Pger012172.1
Basic Information
- Insect
- Panorpa germanica
- Gene Symbol
- -
- Assembly
- GCA_963678705.1
- Location
- OY783206.1:26767738-26769219[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0011 0.072 14.6 0.7 1 23 148 170 148 170 0.98 2 11 0.0078 0.5 11.9 7.2 1 23 176 198 176 198 0.98 3 11 1.7e-05 0.0011 20.3 0.8 1 23 204 227 204 227 0.97 4 11 0.00022 0.014 16.8 1.7 1 23 233 255 233 255 0.96 5 11 3.1e-07 2e-05 25.8 2.7 1 23 263 285 263 285 0.97 6 11 3.4e-05 0.0022 19.4 6.1 1 23 291 313 291 313 0.97 7 11 0.00034 0.022 16.2 1.8 6 23 354 371 349 371 0.93 8 11 8e-05 0.0052 18.2 2.2 1 23 377 400 377 400 0.97 9 11 0.00059 0.038 15.5 2.0 1 23 406 428 406 428 0.98 10 11 0.00093 0.06 14.8 1.7 1 23 434 456 434 456 0.97 11 11 0.00011 0.0073 17.7 3.6 1 23 462 484 462 484 0.98
Sequence Information
- Coding Sequence
- ATGGAAGTTGGAACTGAAATACCAGCAAATAGCAATAATAGTAATATTGATGTTAAAATAGAAACTGAAATATCTGTGAGAGCGCAAATAAAAGAAGAGCATGTTGAAGATGATGTATTAACAGAAAATTTTGAAGTTGATCAATATTGCGTTTACATTAAAAACGAAGAAGGGGGCACGTCGGAATATCTGTGGTGTAGCACCTGCTGTGCGTGCTATAAAGATGTGACAAGTTTAAGAAAACACAAGGAAGGTAATGCTAGATGCaaccaaattaataataacacgAGTCTACAACACAAGACACAGGACGATAAAGCATGTCAGCTATCATCTGATAAGTATagcaacaataataaaattagttcaTCCTTAACCGAAAATCATGAGATATGTGAACGTAGAGAAGCACCCATCTTAGAGAAACTCAAAGAAAGACCTTTTCCATGTGGAATATGTAACAAATGGTTTACTACTAAACAAAACTTACAGTTTCACATTTTAACACACACCGGCGAGAAACCTCACACATGTGATACTTGTAACAGGCATTTTGCTCTAAAAAGACACTTAGATAGGCATCTCTTAACGCATACTGGAGAGAAACCCTATTCTTGTAGTATTTGTAGCAAGTCATTTGCTATAAAGAGTCTATTAAATCGTCATAATCGAATTAATCATGCAGCGGAGAATCTTTACTTGTGTACTATTTGTCATATTTCTTTTGCACAAGAGTTTGAATTAACTGAACACAAAAAGACACATATAAAAAAGACTAAAGATTCTTACTTTTGTCGAGGATGTGATAAGACTTTTACAACTAAAAGTCATTTAAACATTCATATTGCAACACATGGAAGAGTAAAGCGCCATTCATGCGACATTTGCAGTAAATGTTTTGCTCGCAAGCAACATTTAGCTAGACATGTATTAACGCACAATAATGTGTCCCCATCTGATGAATATATAAGTTCTTTTAATCGCATGTACGAATCAAATGGTTATAAACAAATATGTATAGCGGAGAAATCGAAAGAGAAACCTCACTCTTGTATAGCATGTGGTAAATCGTTCAACAAAAAGAACTTATTAGTTCAGCATATACGAACTCATACCGGGGAGAAGCCCTTTTCGTGTAATActtgtaataaatcatttacaCTTAAGGTTCAATTGACTGTACATAATCAAACTTATCATGCCAGTGATAATCCTTTCATTTGTTACCAATGTAATAATACATATAgtacaaaatatgaattaattgaACATAAGAAAACACATGTCTTAGAGAAAATCTACTCTTGTTATGCATGTGATAAAACTTTCAATTCTCAAGAATGTTTAGATTCTCATATTGTAACACATACAGGAGAGAAACCTTTTTCATGCACAATTTGTTTCATGTGTTTTGATCGAAAGCAACAGTTAGCTGGGCATATGCGTAAACACAGTAAAGCGAAACCATATTCTTGTGAATGA
- Protein Sequence
- MEVGTEIPANSNNSNIDVKIETEISVRAQIKEEHVEDDVLTENFEVDQYCVYIKNEEGGTSEYLWCSTCCACYKDVTSLRKHKEGNARCNQINNNTSLQHKTQDDKACQLSSDKYSNNNKISSSLTENHEICERREAPILEKLKERPFPCGICNKWFTTKQNLQFHILTHTGEKPHTCDTCNRHFALKRHLDRHLLTHTGEKPYSCSICSKSFAIKSLLNRHNRINHAAENLYLCTICHISFAQEFELTEHKKTHIKKTKDSYFCRGCDKTFTTKSHLNIHIATHGRVKRHSCDICSKCFARKQHLARHVLTHNNVSPSDEYISSFNRMYESNGYKQICIAEKSKEKPHSCIACGKSFNKKNLLVQHIRTHTGEKPFSCNTCNKSFTLKVQLTVHNQTYHASDNPFICYQCNNTYSTKYELIEHKKTHVLEKIYSCYACDKTFNSQECLDSHIVTHTGEKPFSCTICFMCFDRKQQLAGHMRKHSKAKPYSCE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -