Pger010347.1
Basic Information
- Insect
- Panorpa germanica
- Gene Symbol
- -
- Assembly
- GCA_963678705.1
- Location
- OY783206.1:1442218-1448591[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0011 0.074 14.6 4.4 1 23 229 251 229 251 0.97 2 11 0.0057 0.37 12.4 9.6 1 23 257 279 257 279 0.95 3 11 3.6e-05 0.0023 19.3 5.3 1 23 285 307 285 307 0.98 4 11 0.0015 0.094 14.2 1.1 1 23 313 335 313 335 0.95 5 11 1.1e-05 0.0007 20.9 0.7 1 23 341 363 341 363 0.97 6 11 1e-05 0.00065 21.0 0.1 1 23 369 391 369 391 0.97 7 11 0.0008 0.052 15.0 2.0 1 23 396 418 396 418 0.97 8 11 0.00024 0.016 16.7 0.6 1 23 424 447 424 447 0.96 9 11 0.00068 0.044 15.3 0.1 1 23 476 498 476 498 0.98 10 11 0.079 5.1 8.8 6.4 1 23 569 591 569 591 0.96 11 11 8e-05 0.0052 18.2 4.1 1 23 601 623 601 623 0.97
Sequence Information
- Coding Sequence
- ATGTGTACTGCCCCAAGCAATCCTTCGGCGGGTTTTGGGGGATATACGTGGGGCTTTGCACCCGAAACCCCAAGACCCGAAGAGTTAACACCTAACATAAGCAATTATACTATAAGTAACACGCCTTTTCAGTTAGGTACCCCGGATGGCGGTCCCCTTGTTTCACCCAAAAATGTAGATACCAAGGTGGGCCTTCTTGGTGGTAAAGTTCGGCGGACTATGTTTGTAGTGAATGACCCATTTGCACAAGGAACGGCAGTATCCAGGGCACATTCTACATCGATGCATAAAAAACATGATGTTCTTAGTATATGTTgtgataaaaattgtaattgtgACGCCTCGAATACAACTCCGATCTTTACAActGCTGGATCTACAGTAGATAAGTCATCCATGTCTGTTCCACCACCTAAGCATTTTATGACTCCGATAGGTCCCTTGCAGCTTACAGCAGAAGAATGCAATGAAATTTTAATGAAGCGGGCTGTTGCGGCTGCAAGTCAAGTAGCTAATAACTCTGAACACTCCGTTCATCATAGTGATCTTATTATTGGTATGTCTAGCCAAAAATTAGGTATGGATGACCCAGATGACTCCCAAACAGCACCCCCACTACATTGTCCAAAACTAGAACCAATCTCAAGTTCACAAGTTACTCCTACGATTCCAAAAGAGCGACCTTATTCGTGTGATGACTGCGGCAAGTCCTTCTTGCTTAAACACCATTTAACAACACATTCTAGAGTTCACACAGGCGAGCGTCCCCATATATGCGTTCACTGCGGCAAGAGCTTCGCACACAAACACTGTTTGAACACTCATCTTTTGTTGCACTCAACTGAGCGGCCGTACCAGTGTCCAGAATGCAAGAAAAGCTTCACATTGAAACATCATTTGCTTACACATTCAAGGGTTCACAGCAGAGATCGGCCTTTTATATGTCAAGAATGTGGTAGAGCGTTTCCTCTAAAACGACACCTTGTTACGCATGGAAAATTTCATGCTGGAGAAAGACCATATGTATGTGAAGAATGTGGAGAGAGTTTTGCGCAAAAAGATCACTTAgtAATGCACTCACGCTTCCACGGTAGCACAAATCCATTTGTGTGTCCGGATTGTGGAGCGACCTTTCCACGTAAATTTCAGTTGGTAAATCATGGTCGTCTTCACGGCAGAGTGCCACACTCGTGTTCTGTATGTGGAAAAGAGTTTTTACAGAAACGTACTATGACTGCACATATGCGcCTTCACACAGGTGATCATCCATTTACGTGTAACCAATGCGGTGAAAGTTTTCGAATTAAACCAGAATTGAATCAACATAATCGTCTTCAACATGGTGGTACTGCTGGAGTACAGAATAACACGAATAATAATGcgaataatattaattcaaatacTGCAACTGGTGATAGGCCTGGATTTCAATGTCGAGAATGTGGAAGTGCCTATAATAATCGAGAGGCGTTAGCCCTGCATCTACGTCTGCATGCTGGTGATAGAACACTAGTAACTGATTTATGTGCATTGACTGCAGCGTTGCAACCTGGACACTTTTTGTCACAAGCTGGGCAACAAGGTCAAAATTCCTCTGCAACTTCAACCATTACTCCTGGAGCATTACAGATAGTTACATCGACAGGTGCTGTAGTTAGCCATGGCGCAACTCAAACTCCTGTAGCCGCAGCTCGAATAAAAAATCACTTTTGTTCACACTGTAACAAAGGTTTTGCAGCAAAGCATGGATTACTTCAACATAATAGGAGACATCCTAATGGACAATGTACGTTACGGACACATGTTTGTGAACAGTGTGGGAAAGCTTTCTTCCagaaaaatcatttattattacatcaaAGACAGCATCAAGAACATCCAAGGCCTCACCAAATAATGAcaCTTAATCTTCAAACCAATAATATTCAACAAAATTCAACGAACCATCAACAAAAtcaacaacaacagcaacaGTCCAATCACCAACAACAACACGACAACCAACAATCCCAACAGTCTCATAATCAGTCTCAACAGTCCCAGATATCATCGCAACAGCAATCTCAGATATCATCACAACAGTCGCAAATATCATCGCAGCAGTCCCAAATATCATCTCAAATTTCTTCACAACAATCGCAGATATCATCACAACAATCGCAACAGTCTGCAATAATTAGTCAACAATCACAGTTGTCACAACAAAGTGTAAGTCATGCCGTACAAGCTATGAGTCAAATATCATCACAGTTGCATCCTCGTGATCTAGTTATCGgttccgcacattctacacctGTTCAAATATCTCAAGTAGTGCTAGGACAACCAGCTCAGGTAATCAAGTACGAAATTAACATTCCGCAGCCGCAACAAAGAGGTGCAGTCCAGTTAAAGATAACAATGTGA
- Protein Sequence
- MCTAPSNPSAGFGGYTWGFAPETPRPEELTPNISNYTISNTPFQLGTPDGGPLVSPKNVDTKVGLLGGKVRRTMFVVNDPFAQGTAVSRAHSTSMHKKHDVLSICCDKNCNCDASNTTPIFTTAGSTVDKSSMSVPPPKHFMTPIGPLQLTAEECNEILMKRAVAAASQVANNSEHSVHHSDLIIGMSSQKLGMDDPDDSQTAPPLHCPKLEPISSSQVTPTIPKERPYSCDDCGKSFLLKHHLTTHSRVHTGERPHICVHCGKSFAHKHCLNTHLLLHSTERPYQCPECKKSFTLKHHLLTHSRVHSRDRPFICQECGRAFPLKRHLVTHGKFHAGERPYVCEECGESFAQKDHLVMHSRFHGSTNPFVCPDCGATFPRKFQLVNHGRLHGRVPHSCSVCGKEFLQKRTMTAHMRLHTGDHPFTCNQCGESFRIKPELNQHNRLQHGGTAGVQNNTNNNANNINSNTATGDRPGFQCRECGSAYNNREALALHLRLHAGDRTLVTDLCALTAALQPGHFLSQAGQQGQNSSATSTITPGALQIVTSTGAVVSHGATQTPVAAARIKNHFCSHCNKGFAAKHGLLQHNRRHPNGQCTLRTHVCEQCGKAFFQKNHLLLHQRQHQEHPRPHQIMTLNLQTNNIQQNSTNHQQNQQQQQQSNHQQQHDNQQSQQSHNQSQQSQISSQQQSQISSQQSQISSQQSQISSQISSQQSQISSQQSQQSAIISQQSQLSQQSVSHAVQAMSQISSQLHPRDLVIGSAHSTPVQISQVVLGQPAQVIKYEINIPQPQQRGAVQLKITM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -