Pger003895.1
Basic Information
- Insect
- Panorpa germanica
- Gene Symbol
- -
- Assembly
- GCA_963678705.1
- Location
- OY783203.1:39757096-39762108[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0052 0.34 12.5 1.5 1 21 398 418 398 419 0.93 2 17 0.018 1.1 10.8 0.3 3 23 460 481 458 481 0.92 3 17 4.3e-05 0.0028 19.1 2.8 1 23 487 509 487 509 0.97 4 17 0.0036 0.23 13.0 0.4 1 23 515 537 515 537 0.96 5 17 0.0018 0.12 13.9 5.1 1 23 543 565 543 565 0.99 6 17 1 65 5.3 0.1 2 19 576 593 575 598 0.87 7 17 0.00066 0.042 15.3 4.0 1 23 616 638 616 638 0.98 8 17 8 5.2e+02 2.5 2.7 1 23 644 666 644 666 0.85 9 17 0.02 1.3 10.7 4.0 1 23 684 707 684 707 0.93 10 17 0.0065 0.42 12.2 1.2 1 23 714 737 714 737 0.97 11 17 6.1e-05 0.004 18.6 1.3 1 23 750 773 750 773 0.96 12 17 0.0036 0.23 13.0 0.2 1 23 786 808 786 808 0.97 13 17 0.00016 0.011 17.2 2.3 1 23 815 838 815 838 0.97 14 17 7.3e-05 0.0047 18.3 2.0 1 23 844 866 844 866 0.98 15 17 0.008 0.52 11.9 5.4 1 23 872 894 872 894 0.98 16 17 0.00049 0.032 15.7 0.6 1 23 900 922 900 922 0.97 17 17 0.00019 0.013 17.0 0.7 3 23 930 951 928 951 0.96
Sequence Information
- Coding Sequence
- ATGTTAGAAGATAAATCCTTAGGTGTTGATCCTGATACGTCGATGGTGTTTCGGGATGGTCATTCTTCTTTTACCGTAAACAATAGGtatataacacaaaataatataaaaattgaagtaTGTAATAATTCTGACAGCATGGGTTATGGAAGTGACAACGAGCTTATCACTGTACTTGAAGAAGATAATGAGCTGGAAAGCACTACTGATGAAAGGGACTTTATTGAAGATACcgaaaattctaattttatagTAATTACTACATCAAATCCAAATGCTTGTTATAATAATGATATCGAGAACTACAGTTTTATGGAAACAGATCAAATTGTTTTAGAGAATACACATGAACCATTAGTGAATGAGAAATTATTAGAATGTAGATTATGTCATAAGTCTACCACTGAAAGTgacataatttacatttatgataaaaatggaaaagacAACAGTCTGGAAGAagcaataaatgtttttttgtcTATTAAACTTAACGAGCATGATGACAAAAATCGTGGAGTTTGTTCACAATGTTTTGATCAACTTAATGTATGTTATGAATTTAGTGAAAATGATATTAATGCTCAAAGCAAGTCAATAAGTGAAGCAAGTGAAAATTCCGAACGTCAAGATTTATATACACAGAATTCAGACACCTCTGAAGATTTACAATATTCTGATGTGGCTGATATTATAGAAGaCCAAAAAAATGTGCATAATGAAGAAAATTCAAACCATTCTGTTATATTTAAAGCAGGCAATAATTACATTGCATTGAATAAGGCTTCCGTAAAAGCTGAGGTTGAGGATAGCTATGTTGATTCTTTAGTAATAGAGGATTTGAATTATGAAAACAGGCAGTACGTAGCTGTAGCTTCAATGCATGATGATACTGAAAGTGTATATTTTGATACAGAATATTTAGAAGTGGAATTTCTCGACAGTGATTCTGAATCTAAAAGAACTGAAATATCTTCTTCATGTCTTTTGTGTGATCGTGATTTGACATCAATGGAGGATACATTGCAGCATATAGTAAACTATCATCCATCTGAACATGGAAAGgaacacatttgtgttttatgtAATAATGgttttttaatatttgacgATTTAAAAGAGCATCTGCAAAAAGTGCACCTTTTGGTTTATGGGGAGAGTAATCGCAAAGAAGGTAAATACGTTAGAACACATAATTGTAAAGTCTGCCAAAAAAGATATTCATCCGCCGCTTTATTGGCAAAACATACCTGTGTCCAACCAAGTAAAAAGACTTCAAAAGATCTCCATTGTGGAACATGTAATATGAAATTCCACACGAAAGTTCGTCTCAATTTTCACAGACAATTTCATATTGATGGTGCGAGGCAATTATTCTGTGAACTATGTAATGAAGCTTTTAcagatgaaaataatttttttgaccATGTAAATTTCCtccatgagaaagaaaaaatatttgattgttATATTTGCGAAAAATCATTTCACTTAAAATCTGCATTAACCAGTCACATGAGGACACACACTGGACAGAGAAATTACAAATGTGTGGAATGTGGAAAAATGTTTTTGGACAAACAAACATTAAATGAGCATAAGGTGGTTCATATGAAAGTAAAACCTTATCAATGTCATAtttgtttcaaatatttaaatcgtAACTCTCGATTGAAAAAGCATCTGTTAACTCACGAATCGGAGCCAGTTTTTAGACATGTGTCTGTTTGTGCTATTTGTCAAGAAGCATTTTCTTCAAATGAAACTGCCCAGttaCATGATGAGACTTTACATTCACCAGAGAGCCGAGTTAGCTGCATTACTGTCATTTATATTGATATAATATACAGATGTGAATATTGTGAAAAgtGTTTTCATGTTAAAGATTCATTAAATGAACATCGCGCTATTCATCAAGGACCAACTCCTTTTGAGTGCAATATTTGTGGCGTGCAATACAGTGCTTACAGCAGATGTACTACCCATAAAACAACCCATGGAGTTCACAAAGAAGGTGTAGAAAAAGAGGTTTCTCCTGTTGTAAAACACTTTTTATGTGAGcacTGTGGAAAGTCTTATCTACATTGGACATACCTTCAAGTTCatagaaaattaaaacattCGGAAAATCCCCATATGTACAAATGCCAGTATTGTGATATGAAATTTCCAAGCAGttgGGGGGTAGCATATCATCGAAAGAAATTTCATAGCAATAATGACTGTTTAAAAAGAAAGTTAAATGAACACGTATGTCTGGAATGTGACGAAAAATTCAACAACAAAACTGCATTGAACAAACACTTAAAATCTGCTCATCCTACTTCCCGTGGAAAAAGACTAGAATCAAaaatgtttaaTTGTACTCAATGCGGGAAACAACTTGCATCACGAGCTGGCTTAATGACACACGCTTTGACACATGAACCGGAAGGGAAGAAATTTCAATGCACTCAGTGCGAAAAGATGTTTTATCACAATTCTGGACTTGTCAGCCACGTTAAACGAATACACAATAAAATAGCTAACTATAATTGCTCTTACTgtgaaaagaaattttataatctAAGTGATATGGAAAATCATGTTAGGAAACATACTGGAGAAAAACCATTTTCGTGCGAGACTTGTGGACATAATTTTCGAACCCGCAGCATGTGTAATGAACATATGAGAATACATAAGGATATTCGGCCATTTGAATGTGAAATCTGTCTGGTAAAATTTCGACGTTCTTATGCGCTAAAAAATCATAAGTTGATTCATACTGGTGTTAAGAATTTTGGATGCAATCAATGTCCCAGAACTTATCGTTTAAAATCTGAACTCAAAGCGCACATGAAAGCCAAACATTTAAATCCATCTTATGTTTTGATGGTAGATATGGCAGATGACGATAGTAGAGGACAAATGCTTTCTACATCGACAAATAATGTGCAGAATAtgGATATTTCAAATGAAGttgaatttgaaatgaaaatggaAGATAACGGCGTCGTTATACAAACATATTCTGACTCTGAATTAAATGAACagtcaaatttattaacacctAAGTTGGAAGGAAtcgaaaatattgataaaattaatcatttagACGGCATGtctcataattttataatatctgAAATAATGGAGGAAAATGAAGCTGCTGACGACCCTATGCCAATGCTGAGTCAAGAGTTTTCTAGTGATAACGTTGACGATAATAATCTTCTTCCAATTGTTACAACTGAAGAAATAATTTATGACAATATTAATAGAATATCTAATAGTGATAAACCAATTCATTTAGTTAGGCTACCAGATGGCTCAATACAATTAGCAGAGTTAAATGAAAATGACGAATATATTATAGATGGTGCATACCCAGATACTATTTCTGATGATTCTCACTTGCAAGAATCGTATTTCATTTCTgaacaaaatatgttaaattctCATGATGATTCTACCGAATTTCAACAGGTTTTGGTGAACGATGGCTCAGGGAATTTAATACTGAAACACAGAGTTGTTTTGTCTAACGACAATTTAGTAATCTCATAg
- Protein Sequence
- MLEDKSLGVDPDTSMVFRDGHSSFTVNNRYITQNNIKIEVCNNSDSMGYGSDNELITVLEEDNELESTTDERDFIEDTENSNFIVITTSNPNACYNNDIENYSFMETDQIVLENTHEPLVNEKLLECRLCHKSTTESDIIYIYDKNGKDNSLEEAINVFLSIKLNEHDDKNRGVCSQCFDQLNVCYEFSENDINAQSKSISEASENSERQDLYTQNSDTSEDLQYSDVADIIEDQKNVHNEENSNHSVIFKAGNNYIALNKASVKAEVEDSYVDSLVIEDLNYENRQYVAVASMHDDTESVYFDTEYLEVEFLDSDSESKRTEISSSCLLCDRDLTSMEDTLQHIVNYHPSEHGKEHICVLCNNGFLIFDDLKEHLQKVHLLVYGESNRKEGKYVRTHNCKVCQKRYSSAALLAKHTCVQPSKKTSKDLHCGTCNMKFHTKVRLNFHRQFHIDGARQLFCELCNEAFTDENNFFDHVNFLHEKEKIFDCYICEKSFHLKSALTSHMRTHTGQRNYKCVECGKMFLDKQTLNEHKVVHMKVKPYQCHICFKYLNRNSRLKKHLLTHESEPVFRHVSVCAICQEAFSSNETAQLHDETLHSPESRVSCITVIYIDIIYRCEYCEKCFHVKDSLNEHRAIHQGPTPFECNICGVQYSAYSRCTTHKTTHGVHKEGVEKEVSPVVKHFLCEHCGKSYLHWTYLQVHRKLKHSENPHMYKCQYCDMKFPSSWGVAYHRKKFHSNNDCLKRKLNEHVCLECDEKFNNKTALNKHLKSAHPTSRGKRLESKMFNCTQCGKQLASRAGLMTHALTHEPEGKKFQCTQCEKMFYHNSGLVSHVKRIHNKIANYNCSYCEKKFYNLSDMENHVRKHTGEKPFSCETCGHNFRTRSMCNEHMRIHKDIRPFECEICLVKFRRSYALKNHKLIHTGVKNFGCNQCPRTYRLKSELKAHMKAKHLNPSYVLMVDMADDDSRGQMLSTSTNNVQNMDISNEVEFEMKMEDNGVVIQTYSDSELNEQSNLLTPKLEGIENIDKINHLDGMSHNFIISEIMEENEAADDPMPMLSQEFSSDNVDDNNLLPIVTTEEIIYDNINRISNSDKPIHLVRLPDGSIQLAELNENDEYIIDGAYPDTISDDSHLQESYFISEQNMLNSHDDSTEFQQVLVNDGSGNLILKHRVVLSNDNLVIS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -