Basic Information

Insect: Panorpa germanica
Gene Symbol: -
Assembly: GCA_963678705.1
Location: OY783215.1:2815219-2817276[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.97 63 5.3 3.2 1 23 242 265 242 265 0.92

2 12 0.002 0.13 13.8 1.1 1 23 269 291 269 291 0.99

3 12 0.0065 0.42 12.2 2.6 2 23 299 320 298 320 0.96

4 12 2.3e-07 1.5e-05 26.2 1.3 2 23 327 348 326 348 0.97

5 12 0.00014 0.0091 17.4 1.7 1 20 354 373 354 376 0.94

6 12 0.0031 0.2 13.2 0.3 1 23 383 406 383 406 0.96

7 12 1.9e-06 0.00012 23.3 0.5 1 23 429 451 429 451 0.99

8 12 0.0002 0.013 17.0 0.9 1 23 457 479 457 479 0.96

9 12 6.9e-06 0.00044 21.6 0.7 1 23 485 507 485 507 0.98

10 12 0.00011 0.0074 17.7 10.1 1 23 513 535 513 535 0.98

11 12 5.8e-05 0.0037 18.6 1.4 1 23 541 563 541 563 0.97

12 12 0.0017 0.11 14.0 1.0 1 23 569 592 569 592 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.97	63	5.3	3.2	1	23	242	265	242	265	0.92
2	12	0.002	0.13	13.8	1.1	1	23	269	291	269	291	0.99
3	12	0.0065	0.42	12.2	2.6	2	23	299	320	298	320	0.96
4	12	2.3e-07	1.5e-05	26.2	1.3	2	23	327	348	326	348	0.97
5	12	0.00014	0.0091	17.4	1.7	1	20	354	373	354	376	0.94
6	12	0.0031	0.2	13.2	0.3	1	23	383	406	383	406	0.96
7	12	1.9e-06	0.00012	23.3	0.5	1	23	429	451	429	451	0.99
8	12	0.0002	0.013	17.0	0.9	1	23	457	479	457	479	0.96
9	12	6.9e-06	0.00044	21.6	0.7	1	23	485	507	485	507	0.98
10	12	0.00011	0.0074	17.7	10.1	1	23	513	535	513	535	0.98
11	12	5.8e-05	0.0037	18.6	1.4	1	23	541	563	541	563	0.97
12	12	0.0017	0.11	14.0	1.0	1	23	569	592	569	592	0.96

Sequence Information

Coding Sequence: ATGAGCGATATATTCAAAAGCATGTGCAGACTTTGTATGCATGTAGGAAATTCGATGATACCTATTTTCAGCGAAGATGAATTGAGTAATATTACCGAAACAATAGTGGCTTGTGTTCCACAAGTTATTATTTCTAGAAATGACGGTCTACCTGAAAACATTTGCTTAAAATGTTCGGTTCGGTTAAATGACGCTTTTACTTTTAAACAATTATGTGAAAGCTCCGAtacaattttaagaaaattggTCGATGAATCGCTTAGTGTATTACAATATAacgaatataataaatgtataaatataaacagcAGCAATCAAGGGCACGAAGTAATAGatccaattaatttaattgagtGTTCTTTACAAGTTACAACAGAAAATGATTTGGCAGAAACTAATTTCGAATTAACTAAGCTAAAACACAGAGCGAAGAATATAGTGTTCAATAATGAGACTGAAAATAATAAGACTTTGTCATCGTTACCCAGTGATCACATCAAAGAAGAAGTGTCCGAAATGCCTATTAAAATGGAAGAAGAACTGCAAAATGAAAAGGCATCAGAAGAATTGAATGCTAGTGAAAAATtgatttacaaaacaaaatgcaaagaaaaaataatacgtATAGTAGAAGAAGTGAAAGAGAAGGTAGAGAAGAAAAAGATAATTAAAGACAATAGGGTAAAATCGCGTTTTAAAACTCCgaaattgaaaatgaataaatatagaTGTCATATGTGCAATGAAGATCAATTTTCAAGCATAAAGGAACTCAAAGATCATCGCAGCACGCACCAAGGCCCATTCAAATGCAAATATTGCGAACGAGAATTATCAACTTGGAGAGCCCGAATAAATCACGAACGTACTCATACTAATGAAAAAAGAAGCACACAGTGTAACATTTGTTTGAAAGTCTTCAAAACATTTAAGAGATTATCTCGTCACAAAACTATTCATACAGGAGTAATGAAGACATCATGTCCCCTTTGTGATAAAGAGTTTGCACATAAAGGCAACCTCACGCGCCATATGTTAACGCATCAGAACGTAAAGCCATATGCTTGCGAAATCTGTCACACTAGGTTTACACAAGCCGTATCTCTCAAGGCTCACATGATTTGCCACTCAATGACATTAGAAAGACACCCTTGTCCTATTTGCAAATACAGTAATATCAGAAAAGCAGCTTTGAGGGCTCATATGATATCTAAACATTTAGTTAGAATAGATAGTGAAAGAAAAGGAGACGATGGAAACCAGAAGATAGAAAAACTAGGTACCTATCAATGCTCTGATTGTGATAGAGTATTATCGTCGGCTCAAACTTTAAAAATCCATATGAAAACACACACTGGTTTAAAAGAATATCTTTGCAGACATTGTGGAAGACCGTTTAGTTCAAAAACTGGATTAGATATCCACGAGAGAATACACACGGGTGAAAAGCCTTTTGTATGTAATCTATGTTCCAAGAGATTTACGCAACAGATTGGACTTACAACCCATATATTAACGCACACTGGAGAAAAACCACACAAGTGTAAGGTTTGCTTCAAATGTTTTTCACAAGGATCCCATCTCAGGACCCATATGAAGACACATACTGGTGAAAGAAAACACGTATGTGATATGTGCAACAAGGCTTTCGCTCAGAGGGAAGGACTTCGCTATCATAAAATGACACACACGGGCGAGACACCTTTTGTTTGTCAGTTCTGTGGTCGtggtttttatatacaatacaaattaaaagttcatcTTGATAAGAATCATGGGTTCCAAATCCAAGATAATAGTAAAAACGATCCCGAAATTTCGAATCAAGAAATGCAGAAGACtcaagaaattttaataaaagaaaatatatttgtgtaa
Protein Sequence: MSDIFKSMCRLCMHVGNSMIPIFSEDELSNITETIVACVPQVIISRNDGLPENICLKCSVRLNDAFTFKQLCESSDTILRKLVDESLSVLQYNEYNKCININSSNQGHEVIDPINLIECSLQVTTENDLAETNFELTKLKHRAKNIVFNNETENNKTLSSLPSDHIKEEVSEMPIKMEEELQNEKASEELNASEKLIYKTKCKEKIIRIVEEVKEKVEKKKIIKDNRVKSRFKTPKLKMNKYRCHMCNEDQFSSIKELKDHRSTHQGPFKCKYCERELSTWRARINHERTHTNEKRSTQCNICLKVFKTFKRLSRHKTIHTGVMKTSCPLCDKEFAHKGNLTRHMLTHQNVKPYACEICHTRFTQAVSLKAHMICHSMTLERHPCPICKYSNIRKAALRAHMISKHLVRIDSERKGDDGNQKIEKLGTYQCSDCDRVLSSAQTLKIHMKTHTGLKEYLCRHCGRPFSSKTGLDIHERIHTGEKPFVCNLCSKRFTQQIGLTTHILTHTGEKPHKCKVCFKCFSQGSHLRTHMKTHTGERKHVCDMCNKAFAQREGLRYHKMTHTGETPFVCQFCGRGFYIQYKLKVHLDKNHGFQIQDNSKNDPEISNQEMQKTQEILIKENIFV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -