Pger012034.1
Basic Information
- Insect
- Panorpa germanica
- Gene Symbol
- -
- Assembly
- GCA_963678705.1
- Location
- OY783206.1:25646155-25647369[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00012 0.0075 17.7 0.1 1 23 94 116 94 116 0.97 2 10 5e-05 0.0033 18.8 1.0 1 23 122 147 122 147 0.95 3 10 6.6 4.2e+02 2.7 0.1 7 23 163 179 163 179 0.89 4 10 0.00018 0.012 17.1 0.6 1 23 213 235 213 235 0.96 5 10 5.5e-05 0.0036 18.7 2.8 1 23 241 263 241 263 0.95 6 10 7.2e-06 0.00047 21.5 2.0 1 23 269 291 269 291 0.96 7 10 2.8e-06 0.00018 22.8 0.6 1 23 297 319 297 319 0.95 8 10 1.6e-05 0.001 20.4 1.5 1 23 325 347 325 347 0.93 9 10 4.6e-06 0.0003 22.1 1.1 1 23 353 375 353 375 0.94 10 10 5.5e-06 0.00036 21.8 0.8 1 21 381 401 381 402 0.93
Sequence Information
- Coding Sequence
- ATGTTCAACAGAGAGAAGATTTTGTTTCACATTAAAAGCGAGGTGGATGAAGATTCCTGTACGGCTTCCTCTCAAGAGCATGAGTCTGCTTGTCATGGTGATGAACCATGGAAAACTTCTTACACGGAAGATAATGATCATTCAGCATCCGCTCAACTGGACTTTGAAATCTCGACTGACTTCACTAAATTGTCAAATTTAAACTTATTGCCTAAAGAACAATTAAAAGCAGTTACTGAtattcaacaaaatttattacaagATTTTAATGAATCAATTTTTATCTGTGAcgtatgtagtaaaacattttctaTTCTTGACAATCTAGTATTGCATATACAAGAACATATAAGAAAGAGATATTATATATGCGAAGTAAATAATTGTAACAAGTCGTTTACCAAAAAGAAATTGTTACTTAAACACGCACGCAGTGAGCATCCCGTTCAAAATCAACATCAACAAACTTGTAACGTTAGTAACAACAACAAATCTTTTGATAATGTAAGAAGTTTGATAAAACACGAAGATGAACATGTGgaagataaattaaattcatgTGATGAGTCCGATAAATCGTTTAAACGAAAATGTGAATTGATCAGCCTTAATGTTGTACATGCTAACAAAAAAACTTATTCTTGTAAGAGGTGCAATGTAATATTTACACGAAAAGAAGATTTAATTCAGCATAAAGTTGTACATGCTGAAGAAAGACCATATGcatgcgatgaatgcaataaaacgtttaaacgCAAACATCAAGTAACCCAGCATAAAGTTGTACATGCTGAAGGGAGACCATATGCATGCgataaatgcaataaaacgtttaaacgCAAACATAACTTAATCGGGCATGGAAATGTACATGCTGAAGAAGAACCTTATGcatgcgatgaatgcaataaaacgtttaaacgAAAAAGTGGTCTAAATGACCATAAAGTTATACATGCTAACAAAAAACCATATTTATGTAATGGGtgcaataaatcatttaaacgAAAACGAGAATTAACCATGCATAAAGTTATACATGCTAACAAAAAACTATATCTATGTAATGGgtgcaataaaacgtttaaacgAAAAGGAGATTTAACCCAGCATAAAGTTGTACATGCCGAAGAAAAACCATATGCatgcaatgaatgcaataaaacgtttaaacgAAAACGAGATTTAATCAATCATGCTAAAAAACTTTGTTAA
- Protein Sequence
- MFNREKILFHIKSEVDEDSCTASSQEHESACHGDEPWKTSYTEDNDHSASAQLDFEISTDFTKLSNLNLLPKEQLKAVTDIQQNLLQDFNESIFICDVCSKTFSILDNLVLHIQEHIRKRYYICEVNNCNKSFTKKKLLLKHARSEHPVQNQHQQTCNVSNNNKSFDNVRSLIKHEDEHVEDKLNSCDESDKSFKRKCELISLNVVHANKKTYSCKRCNVIFTRKEDLIQHKVVHAEERPYACDECNKTFKRKHQVTQHKVVHAEGRPYACDKCNKTFKRKHNLIGHGNVHAEEEPYACDECNKTFKRKSGLNDHKVIHANKKPYLCNGCNKSFKRKRELTMHKVIHANKKLYLCNGCNKTFKRKGDLTQHKVVHAEEKPYACNECNKTFKRKRDLINHAKKLC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -