Basic Information

Insect: Panorpa germanica
Gene Symbol: -
Assembly: GCA_963678705.1
Location: OY783206.1:9631952-9635901[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.4 26 6.6 0.1 1 23 138 161 138 161 0.93

2 11 0.098 6.4 8.5 3.9 1 23 196 218 196 218 0.97

3 11 4.8e-05 0.0031 18.9 1.3 2 23 322 344 321 344 0.95

4 11 2.4e-05 0.0015 19.9 4.4 1 23 355 377 355 377 0.97

5 11 1.2e-05 0.00078 20.8 3.0 1 23 382 404 382 404 0.97

6 11 8.8e-05 0.0057 18.1 3.4 1 23 410 432 410 432 0.96

7 11 1.9e-06 0.00012 23.3 4.0 1 23 442 464 442 464 0.99

8 11 1.2e-06 7.9e-05 23.9 2.0 3 23 486 506 485 506 0.99

9 11 3.2e-05 0.0021 19.5 0.6 3 23 514 534 513 534 0.98

10 11 5.6e-07 3.6e-05 25.0 0.2 1 23 540 562 540 562 0.98

11 11 3.5e-05 0.0023 19.3 0.1 1 22 568 589 568 589 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.4	26	6.6	0.1	1	23	138	161	138	161	0.93
2	11	0.098	6.4	8.5	3.9	1	23	196	218	196	218	0.97
3	11	4.8e-05	0.0031	18.9	1.3	2	23	322	344	321	344	0.95
4	11	2.4e-05	0.0015	19.9	4.4	1	23	355	377	355	377	0.97
5	11	1.2e-05	0.00078	20.8	3.0	1	23	382	404	382	404	0.97
6	11	8.8e-05	0.0057	18.1	3.4	1	23	410	432	410	432	0.96
7	11	1.9e-06	0.00012	23.3	4.0	1	23	442	464	442	464	0.99
8	11	1.2e-06	7.9e-05	23.9	2.0	3	23	486	506	485	506	0.99
9	11	3.2e-05	0.0021	19.5	0.6	3	23	514	534	513	534	0.98
10	11	5.6e-07	3.6e-05	25.0	0.2	1	23	540	562	540	562	0.98
11	11	3.5e-05	0.0023	19.3	0.1	1	22	568	589	568	589	0.96

Sequence Information

Coding Sequence: AtggaaataataaagtataatttGGATAGAATTTGCCGAGTTTGTATGGCTGAAACATTAGATATGCGAAGAATATTTGGATGCTCCGATAATATATGTGATATCCTAATGACATGTTCATCAATTCAACTGTCGGAAAATGATGGTTTGCCGTCCCAAATTTGTGCTCCCTGTGTGCACCAGGCAAATAGTGCTGTATCATTTAAGCAACAATGTGAAAGGTCTGATACTATTTTGAGAAATTATATAAAGACACAACATTCTTTACTCAGTAATATTAAACAAGAGCAAACCAATTTACCTAACTTCAATGAATTTCATGACTTATTTAAACCAGAAATTGATATTGAGGTTTCCCAACAGCTTAGCTTTGAAAACCAAGATAGTGATCTGACTTCCACTGGTGCCTTATATCAGTGCGGTGTGTGTGGTGCCCCATGTTTAAGTGCAAAAGAACTTACAGGGCATATATTAGAACAACACACAGGTGAAAATATCAAAAGCAAATGCCATGGTGATTCAAAAAATTCTGACCAAAATCACATAGAAATTCATATAGAAGGCTCACAAAGTActgatgttaaatataaatgcgaatattgttgtgaaatttttgaaaacacCGAACACTTAGTCAAACATAaagCAAGTCATAATCAAGATCATACCAACTTTTGCCTTCATTGTGATTGtggatttttaaaattatctgATATAAGaagacataataaaatatatcataatcAAATAGAAAGTAACGCTAGTTCAGATGGTGTATATCGAAATTGTGCGGACACACCTCAGCATAGTTCTGATGGAGAATTTTCAATTGAAGATTTATTGGATGTTGAAGAAAATAAACCTAAGAAAAAAGGTAGACCGAAAGGTAAAAGAGGGCCTAAAAAAGGATCAATTAGAAAAACCacTGATGGCATAGAGAGGAAAAAAgatatagttattttaatttgtgaatTGTGCAATGAGGAGTTTAAAAGAAAACTGCATCTTAAAAGGCATATGGAATCAGCACATGGAGAAAAATTACCACCAGAAGAAAAaatacaCGAATGTACTGACTGTAAAAAAGCGTTCGCTAAAGTGGAGCACCTTAAACGACATATGAAAAATCATGcagaaaaaatatttgattgtgATGAATGCCCAAAGAAATTTTCAAGattggATCATTTAACAGAACATAAAAAAAGACATACTGGCGAAAGGTCTTTTCTTTGTAGTAAGTGCGGAAAAGGGTATTTTAAGCAGAGTCATCTCGACAAGCATATGTTAACTCATCTTAATGATCATTTGGAGAAGCCGGTCTATGAATGTACAATTTGCGGAAAGAAATTAAATCATTCAAATCATCTGCAAGTACACATGAGAACACATCGTGATCGTAACGGTCAGCCTCTTATACCACCTATTCCAAATCCAAATAAAAAGgtCATACTATGCAGTGTATGCGGCAAAAGCTGCAGCTCTAGAAGCAATTTAGCAGTTCATATGAGGCGCCATACTGGACAAATGACGaacttttgtaaaatatgtGGAAAAGGTTATCCTAGAACAACTGATTTAACACTTCATATGAGACAACACACTGGAGAGCGTCCCTTTGTTTGTTCAATTTGTAATCGTGGTTTTGCACGTTCTGACAAATTAGCAATACATATGAGAACACATACCGGAGAGAAACCTTATGTATGTCCTACATGTGGAAGGGCTTTCGCTCAAAGCAATGATCTAGCATCACATAAGCGACGTAACATGTGTGGACAGAGTGCAAATGTTCATACAACAAACAATATACATAGTTCCCAGATAAATACTTCAGCTGTACATGTTAGAGCTGCCGATCTCATGAATGTTAATGTAGTTCAAAGACTAGATAGAGAATTACAAGCTCAGGCACATAACAGGGCTGCTGAAATGGCACATTCAAGAGCTGTAGAATTGGCAGCACAAGCCGCAGCGCATCACAGTCGTGTGGAATACACAGACTATACTACAGCGACTCTGTTGCAAAATTTATCTAGTAATCATTTCATGAGATAA
Protein Sequence: MEIIKYNLDRICRVCMAETLDMRRIFGCSDNICDILMTCSSIQLSENDGLPSQICAPCVHQANSAVSFKQQCERSDTILRNYIKTQHSLLSNIKQEQTNLPNFNEFHDLFKPEIDIEVSQQLSFENQDSDLTSTGALYQCGVCGAPCLSAKELTGHILEQHTGENIKSKCHGDSKNSDQNHIEIHIEGSQSTDVKYKCEYCCEIFENTEHLVKHKASHNQDHTNFCLHCDCGFLKLSDIRRHNKIYHNQIESNASSDGVYRNCADTPQHSSDGEFSIEDLLDVEENKPKKKGRPKGKRGPKKGSIRKTTDGIERKKDIVILICELCNEEFKRKLHLKRHMESAHGEKLPPEEKIHECTDCKKAFAKVEHLKRHMKNHAEKIFDCDECPKKFSRLDHLTEHKKRHTGERSFLCSKCGKGYFKQSHLDKHMLTHLNDHLEKPVYECTICGKKLNHSNHLQVHMRTHRDRNGQPLIPPIPNPNKKVILCSVCGKSCSSRSNLAVHMRRHTGQMTNFCKICGKGYPRTTDLTLHMRQHTGERPFVCSICNRGFARSDKLAIHMRTHTGEKPYVCPTCGRAFAQSNDLASHKRRNMCGQSANVHTTNNIHSSQINTSAVHVRAADLMNVNVVQRLDRELQAQAHNRAAEMAHSRAVELAAQAAAHHSRVEYTDYTTATLLQNLSSNHFMR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -