Pger026623.1
Basic Information
- Insect
- Panorpa germanica
- Gene Symbol
- -
- Assembly
- GCA_963678705.1
- Location
- OY783215.1:2823243-2825662[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00014 0.0091 17.4 1.9 2 23 229 250 228 250 0.97 2 13 1.2 76 5.1 2.8 2 23 258 280 257 280 0.93 3 13 1.5e-06 9.5e-05 23.7 0.4 3 23 288 308 286 308 0.95 4 13 0.087 5.6 8.7 0.2 1 23 314 337 314 337 0.88 5 13 0.00023 0.015 16.7 1.5 1 23 343 365 343 365 0.98 6 13 1.9e-06 0.00012 23.3 1.2 3 23 389 409 387 409 0.96 7 13 0.0032 0.21 13.2 1.1 1 23 413 435 413 435 0.95 8 13 0.019 1.2 10.7 2.6 3 23 446 466 444 466 0.96 9 13 4.2e-05 0.0027 19.1 2.3 1 23 472 494 472 494 0.98 10 13 0.00086 0.055 15.0 0.3 3 23 504 524 502 524 0.96 11 13 7e-07 4.5e-05 24.7 1.1 1 23 530 552 530 552 0.97 12 13 0.00019 0.012 17.0 0.8 3 23 560 580 558 580 0.96 13 13 4.1e-05 0.0027 19.1 1.2 1 23 586 609 586 609 0.97
Sequence Information
- Coding Sequence
- atggaaaaagtGTATCCAGGAATATGCAGATTTTGCTTGCAAACTACGAGTAAATTAACACCAATATTTGGAGATGATGTAGATAATATAAGCGATAAAATAATgactgttacgatactaaaaATTGATAAGGAAGATGGTTTACCACCTAATATGTGCACGAGTTGCATTGATCTGTTGAAAATTTCGTTGTCTTTCAAAAAACAATGCGAAAATTCGGATATTCTACTACGTCAATCAGAAGAGCCTTTCAAAAGAATATTAAACATCCATAAAAATATATCGAAGGAGCCTTCAGTTCAAAATAAGGAAGACTTGCCATTTGCAATTACACCAGCTTCTTATAATTTGTGCATGGAaacttgtatttttaaaaaagctaTTGACTATTTTAATGATattgaaaatgttgaaaataatCGATTACCATTGGATGAATTAGAAATCAAGGAAGAGGGGCAACGTGTGAAAGATGAATTTTCGGATGATAACGATGATGATTTTGATCAAGAAGACGATGGTTCCGATGATAAAGAATTTGTACTTGATAAGGATGAAGTTGTCGAACCTGTGGAGTATGTAACACGATCATCAAGTAGAAGAAACAATCTCAAAATTGAAGTTGAGGCTTTATCTTTACCGAATAAATTTAGAGACCATCGAAAAGATAGTTCTCGGAGACTTTACTGCAAATATTGCAACAAAACATTCCGAACTGAAACAGATAGAGCGGATCATATGAAATCCCATGACCCTCAAAATGAAGAAACAAAATGCGATATCTGTATGAAAAAATGCTACTCTGTAAAAGCATTGCAAAAGCATAAAATGGCTACACACACGGATCACACAAAAGTAAACTGCAAACTTTGTGATAAGGTATTTTCTAATCAAGCAAATTTAAGAAGACATGAGTTGATTCATAAAAACGAAAAACCATTTACTTGCGATTTTTGCGGAATGGGTTTCACTCAAGCAGTAGCCAGAGATAGTCATGTTGAATCGAAACAtaaaccagaaaaaaaatataagtgCAAAATGTGTACTAGAAAATTTGAATCAGAAGATCTCTTAGAAGAGCACACCAAAAACCACATTAAGCGCCaggaagaaaaaaaacaacaaaatagagctttaaataagaaagaaaaggaaaagcTTGATTGCGATGACTGCCAGAAATCATTTCCTACTAAGTCATTGTTCAAGAAACATATGAATTTGCACACAAGACCGTTTCTATGTCTTATTTGTGGTAAAGGTCATTCTACAAAAGCCACATTGAAAGCACATGAAAGAACCCATACTGGGCAATCCAAGAAAAAGCCTTGTCTGTGTACAGCTTGTGGAAAAAATTATCAAGATTTGCATGCATTGAAAGTACACGAAAGAACGCACACGGGCGAAAGACCATTTGAATGTCAGGTTTGTCATAAACGCTATATGTCAaacgttttattaaaatctcATATGAGGGTACATACTGAAGGTAATGTGAAGAAATATGGGTGCCCTTATTGTACAAAGAAATTTGCATATCCTTCTGCTGTAAAAACTCATACCTACAGTCATACTGGAGAAAGACCATTTGCCTGCAAGatgTGTGATCGGACTTTCGTACAATCTGGTCACTTACAAGCTCACATGTTATCGCACACAGGCGAAAAGAAACACCTTTGTACTGTGTGTGGTAAAGGATTTGGATTGAAAGAACAATTACGTTATCATATGATGATACATACGGGCGAACAACGGTTTAAATGTGAAGAATGTGGACGaggattttatataaaatataagttaaaaatacatatgCTAAAATCTCATGGACTTGTGTTAAAAATGCGAAATGATGAAGAGGATGATGATAATGATCCATCCGCATCAtctgataataatataaatccagCTAATGTTAATACAGGAAATGTTGGTAATAGCGACGatagtttaaataatataaatagtaataCCTTAAGTAATGCAATTAACAGCACAGAACCTAATAATGCAGTTGTTAATTCCGACATTAAATATCAACACATTACTGATTTAAGTCCGCATATGACCAGCTTAAACCAAAATGTTACATGCCTTAATCCTACAATGATTCCTATGCATTCCAGCATTGGAATCGTTAATCCCATTATTACAAACTTAAATAACATGAATGTTCACAATATGAACGGCGTGGGAATAAAtgctataaatgttattaatttaaacataatcaAACCTCCAGTATCAgtttatgaataa
- Protein Sequence
- MEKVYPGICRFCLQTTSKLTPIFGDDVDNISDKIMTVTILKIDKEDGLPPNMCTSCIDLLKISLSFKKQCENSDILLRQSEEPFKRILNIHKNISKEPSVQNKEDLPFAITPASYNLCMETCIFKKAIDYFNDIENVENNRLPLDELEIKEEGQRVKDEFSDDNDDDFDQEDDGSDDKEFVLDKDEVVEPVEYVTRSSSRRNNLKIEVEALSLPNKFRDHRKDSSRRLYCKYCNKTFRTETDRADHMKSHDPQNEETKCDICMKKCYSVKALQKHKMATHTDHTKVNCKLCDKVFSNQANLRRHELIHKNEKPFTCDFCGMGFTQAVARDSHVESKHKPEKKYKCKMCTRKFESEDLLEEHTKNHIKRQEEKKQQNRALNKKEKEKLDCDDCQKSFPTKSLFKKHMNLHTRPFLCLICGKGHSTKATLKAHERTHTGQSKKKPCLCTACGKNYQDLHALKVHERTHTGERPFECQVCHKRYMSNVLLKSHMRVHTEGNVKKYGCPYCTKKFAYPSAVKTHTYSHTGERPFACKMCDRTFVQSGHLQAHMLSHTGEKKHLCTVCGKGFGLKEQLRYHMMIHTGEQRFKCEECGRGFYIKYKLKIHMLKSHGLVLKMRNDEEDDDNDPSASSDNNINPANVNTGNVGNSDDSLNNINSNTLSNAINSTEPNNAVVNSDIKYQHITDLSPHMTSLNQNVTCLNPTMIPMHSSIGIVNPIITNLNNMNVHNMNGVGINAINVINLNIIKPPVSVYE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -