Pger026014.1
Basic Information
- Insect
- Panorpa germanica
- Gene Symbol
- -
- Assembly
- GCA_963678705.1
- Location
- OY783214.1:10865390-10867923[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 3.1e-05 0.002 19.5 0.7 2 23 85 106 85 106 0.97 2 11 5.3e-06 0.00035 21.9 1.3 1 23 112 134 112 134 0.97 3 11 7.3e-07 4.7e-05 24.6 0.4 1 23 140 162 140 162 0.97 4 11 3.3e-06 0.00021 22.6 0.3 1 23 168 192 168 193 0.96 5 11 5.2e-05 0.0034 18.8 4.5 1 23 198 220 198 220 0.98 6 11 4.7e-06 0.0003 22.1 1.2 1 23 228 250 228 250 0.98 7 11 0.00015 0.0096 17.4 0.2 1 23 254 276 254 276 0.97 8 11 0.0005 0.033 15.7 0.0 3 23 284 306 283 306 0.95 9 11 1 67 5.3 0.2 5 23 327 346 322 346 0.84 10 11 0.00086 0.056 15.0 1.1 1 23 398 421 398 421 0.94 11 11 5e-05 0.0032 18.8 0.7 2 23 472 494 471 494 0.96
Sequence Information
- Coding Sequence
- ATGGATAATATATGTGGTGTATGCCTTCAACCGGGAgagGTAACAAGAAGGCCAGATCTTCAAGTACCAACATGTTTAAAATGTATAGATAATGGAGCAGGCACTCGTCAAACTTCTGGATTTTCAGAAATGTTACAAGCAACTAATAGTATgataagtaattttaataatagtcAAGCACAACGTCCTGTGTCTATAGATCAATCAAACTCAAGACTACTAACCGCAGAAGAGgaatCTGATCAATTTGAAGAATGTCCTGTTTGTAACAAACAATTTACTCGACGAGCATCTTATTTAAATCATGTGAGAAATCACAGTGCTGAAAGGAAACATGTCTGTCAATTTTGTCAAAAGGCTTTTACACAAGCAGCTAATTTGAGAAACCATGAACGAATACACACAAATGAAAGACCTTTTGCATGTTCACAGTGTGGGAAAGCATTTACACAGattacaaatttgaataatCACATCAGATTACATACAGGAGAAAGACCTTATCAATGTCCTGTTGCAGGATGCGATAAAGCATTTGCTCAGGTAACCAATTTGAATAATCATACAAACACACATCACCgtgataaacattttaaatgcaCACTTTGTAAAAAAGCATTTACTCAAATATCGCACTTAAATCAACATTCAAAGTCTCATAAACATCACAATATACGAGAATTCTCCTGTCTAGAATGCCCTAAAACATTTGCCCAACAAGCGCACCTGACTTCACATTCACGGGTCCATTCAAAACCTTTCGAATGCGGCTTATGCGACCAAAAATATGCAACAGAATCAGGATTAAGACGTCATGTGCAGCAGCACCAGGAAACTAAACCAAATGTTTGTCCCATTGACGGTTGTGGAGAAGTATTTTATTCGAATAACTTATTATTGAAACATCTAGAATCACATGATAatcgtaaaaatattaaaaagaatgaTATAAAACCTATGataagttgttattttgataGTTGTAATGACAAATTTGTTGATAGTGAAGAATTAAACAATCATTTAACAGAGGTTCATGGTTTATCACTTGtacataaaagtaaaagaacTGAAAATAAGTCTGAAATTATAGATGTAAGTGAGgaagaaattgaagaaattgaagaaatatCAGAACATGAAGACAGTAACGCAGGATATATTACTGACAGTGATGGAAGTAATAAAACTTACGAATGTAATTATTGCGAGATGAATTTTGATCTCAAATCTGAATTaagtaaacatttatatttaaaacatgatAGAAGAATGGCTTCTGTTGAACCAATCTGTGAAATGGATGTTGATGATGATTCTAGAGAAGGTCTTGTTAGTGATATTAGTGTTCGAGAAGAGGTGCAGGAAGTTGACCAAGTTGATTGGACTGACGATGTTGCTACAGTTAAGGTTGTATGTACTATATGTTTTAACAATTTCTCTGACCAGGAATCTTTAAATAGACATATGATGAAAAGGCATGGTAACATTTCTCGTTAG
- Protein Sequence
- MDNICGVCLQPGEVTRRPDLQVPTCLKCIDNGAGTRQTSGFSEMLQATNSMISNFNNSQAQRPVSIDQSNSRLLTAEEESDQFEECPVCNKQFTRRASYLNHVRNHSAERKHVCQFCQKAFTQAANLRNHERIHTNERPFACSQCGKAFTQITNLNNHIRLHTGERPYQCPVAGCDKAFAQVTNLNNHTNTHHRDKHFKCTLCKKAFTQISHLNQHSKSHKHHNIREFSCLECPKTFAQQAHLTSHSRVHSKPFECGLCDQKYATESGLRRHVQQHQETKPNVCPIDGCGEVFYSNNLLLKHLESHDNRKNIKKNDIKPMISCYFDSCNDKFVDSEELNNHLTEVHGLSLVHKSKRTENKSEIIDVSEEEIEEIEEISEHEDSNAGYITDSDGSNKTYECNYCEMNFDLKSELSKHLYLKHDRRMASVEPICEMDVDDDSREGLVSDISVREEVQEVDQVDWTDDVATVKVVCTICFNNFSDQESLNRHMMKRHGNISR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -