Basic Information

Insect: Panorpa germanica
Gene Symbol: -
Assembly: GCA_963678705.1
Location: OY783210.1:8832006-8833894[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 2.8e-05 0.0018 19.7 2.4 1 23 189 211 189 211 0.97

2 12 2.2e-05 0.0014 19.9 2.5 1 23 217 239 217 239 0.96

3 12 0.00012 0.0079 17.6 4.1 3 23 247 267 245 267 0.96

4 12 3.5e-05 0.0023 19.3 3.6 1 23 273 295 273 295 0.96

5 12 0.00067 0.044 15.3 0.1 1 23 302 324 302 324 0.98

6 12 6.1e-06 0.00039 21.7 0.5 1 23 330 352 330 352 0.98

7 12 0.00044 0.028 15.9 1.5 1 23 358 382 358 382 0.96

8 12 6.6e-06 0.00043 21.6 5.0 1 23 388 410 388 410 0.99

9 12 1.5e-05 0.00098 20.5 1.9 2 23 417 438 416 438 0.97

10 12 0.00015 0.0094 17.4 0.9 1 23 444 467 444 467 0.97

11 12 0.013 0.84 11.2 4.7 1 23 472 494 472 494 0.98

12 12 4.2e-06 0.00027 22.2 0.4 1 23 500 522 500 522 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	2.8e-05	0.0018	19.7	2.4	1	23	189	211	189	211	0.97
2	12	2.2e-05	0.0014	19.9	2.5	1	23	217	239	217	239	0.96
3	12	0.00012	0.0079	17.6	4.1	3	23	247	267	245	267	0.96
4	12	3.5e-05	0.0023	19.3	3.6	1	23	273	295	273	295	0.96
5	12	0.00067	0.044	15.3	0.1	1	23	302	324	302	324	0.98
6	12	6.1e-06	0.00039	21.7	0.5	1	23	330	352	330	352	0.98
7	12	0.00044	0.028	15.9	1.5	1	23	358	382	358	382	0.96
8	12	6.6e-06	0.00043	21.6	5.0	1	23	388	410	388	410	0.99
9	12	1.5e-05	0.00098	20.5	1.9	2	23	417	438	416	438	0.97
10	12	0.00015	0.0094	17.4	0.9	1	23	444	467	444	467	0.97
11	12	0.013	0.84	11.2	4.7	1	23	472	494	472	494	0.98
12	12	4.2e-06	0.00027	22.2	0.4	1	23	500	522	500	522	0.99

Sequence Information

Coding Sequence: ATGGATAACATTATTGACTTGATGGAAACAATGAGTAAAAATGTTTCATTAGaatatcaattaaataaaatttgccGAACCTGTCTTACTGCAGTTGGAGAAATGAAGACTATTTATACTTTAGAAGACACATCGAACGATAACAGTAATGATTTAAAAGATATGTTAATAACATGCGCCAATATACagGTTATACCGAATGATGGATTACCAAACAACATTTGTCTTCAGTGTGTTTCTTATGTTGGAATGGCTTATAATTTTCGAAGGCAATGTGAACGCTCAGATAATACGCTGCGTCATTTTCTTGGCGTTTCGTTAGAATGCAAAGAAACAGAAGAAAGCATCATTAAAAATGATGATCTAGAATTGAAATTAGAAAACGACAATATACTcttagaaaataattacaaagcTACTATTGAAACAGACGTAATTGTAATCAGTTTAGAATCAGATATTAAAATAGAGAAACATGTAAAAACAGATGCTAAGAAGAAAactaaagaaagaaaaataaaaaataagagatCTGAAAGTGAGGATGAGACCCAACAGCCGTTGTTTCCTTGCACCATTTGTACAGAGTGTTTTACTGATGAAAATGACTTGCGGAAACATAAACGTGAACATCCCAGTGATTCTAGACATTTTTGTcagGTATGCACACAATCTTTTTCGAAGCCCGCTACGCTAAAGAAACATATGATAACTCACGATGGAGTACGCAGCCACTTATGTACTGTTTGCGGTAAATGTTTCTGGAGATCAAGTGACCTTAAAGTTCACACCAGAATGCACACGGgTGAACGTCCACATGCCTGTGACAAATGTGATAAAAAGTACCGCACTTCATTTGAATTAAAGGAACACTTAAAAACACATTCTGATAACAAATTCAGTTATATATGTACGATATGCGGTAAAGGAATGGCAACGAGAAACGGTTTGTATGTTCACATGAAAGTTCACAGAGGAGAAAAAAATCATCAATGTACAGTATGCGGTCTAAAGTATGTCACATCTGGGTCCCTTGCCTCACATATGCGCATACACACTCAAGAGAAACCACATGTTTGTACGTTCGAGAACTGCTCAAGAGCATTCATCACTAAATTATCTCTGGAGACACATATTAGAACACATACAGGTGAAAAACCATTCAAATGTCCTCACTGCGAAAAAACATTTGGAAATGCTTCGAATCTGCATATGCACAAGAAAACACATACAGGTGTAAAACCAAAACAATGCAGTGTATGTGAAAAATTCTTTGGAAATTCTCAGTCACTGAAAAAACATATGAGACTGCACACGGGAGAAAGGCCTTATAACTGTAAAATCTgtttagaaaaatttatttcgaGTAGTACGTTAAGTACTCACATAAAAGTAAAACATATGGAAAAACAACATGAATGTGGAATTTGTCATAAACAATTTCATCTGGCTACAGTTTTAAGAAAACATTTAAGAATACATTCAGGAGAAAAACCATATACGTGTCAAGACTGTGGAATGACTTTTGGACAATCTGCAGGACTGTATCAACATATGAAAAGTCATAAAACTCAGATGGAAAATCAAATGAAACCAAATATGTTACACAATAACATACATATGCACAATTTAATGCAAAACTTCCTATGA
Protein Sequence: MDNIIDLMETMSKNVSLEYQLNKICRTCLTAVGEMKTIYTLEDTSNDNSNDLKDMLITCANIQVIPNDGLPNNICLQCVSYVGMAYNFRRQCERSDNTLRHFLGVSLECKETEESIIKNDDLELKLENDNILLENNYKATIETDVIVISLESDIKIEKHVKTDAKKKTKERKIKNKRSESEDETQQPLFPCTICTECFTDENDLRKHKREHPSDSRHFCQVCTQSFSKPATLKKHMITHDGVRSHLCTVCGKCFWRSSDLKVHTRMHTGERPHACDKCDKKYRTSFELKEHLKTHSDNKFSYICTICGKGMATRNGLYVHMKVHRGEKNHQCTVCGLKYVTSGSLASHMRIHTQEKPHVCTFENCSRAFITKLSLETHIRTHTGEKPFKCPHCEKTFGNASNLHMHKKTHTGVKPKQCSVCEKFFGNSQSLKKHMRLHTGERPYNCKICLEKFISSSTLSTHIKVKHMEKQHECGICHKQFHLATVLRKHLRIHSGEKPYTCQDCGMTFGQSAGLYQHMKSHKTQMENQMKPNMLHNNIHMHNLMQNFL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -