Basic Information

Insect: Panorpa germanica
Gene Symbol: -
Assembly: GCA_963678705.1
Location: OY783215.1:1002329-1009021[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.0013 0.081 14.4 0.3 1 22 335 356 335 359 0.88

2 15 0.11 7.2 8.3 1.3 2 23 370 391 369 392 0.94

3 15 0.00093 0.06 14.8 1.7 1 23 394 416 394 416 0.95

4 15 2.4e-06 0.00016 23.0 2.4 1 23 422 444 422 444 0.97

5 15 4.6e-05 0.0029 19.0 4.3 1 23 450 472 450 473 0.96

6 15 8.7e-06 0.00057 21.2 1.6 1 23 479 501 479 501 0.97

7 15 0.0079 0.51 11.9 2.8 1 23 507 529 507 529 0.97

8 15 1e-06 6.7e-05 24.1 0.5 1 23 535 557 535 557 0.98

9 15 3.7e-06 0.00024 22.4 1.6 1 23 563 585 563 585 0.98

10 15 0.021 1.4 10.6 1.3 2 23 676 696 675 696 0.96

11 15 0.033 2.1 10.0 2.3 3 23 725 745 724 745 0.93

12 15 8.6e-06 0.00056 21.2 2.7 2 23 749 772 748 772 0.92

13 15 0.013 0.82 11.3 1.0 5 23 780 798 779 798 0.95

14 15 1.6e-05 0.001 20.4 0.9 3 23 806 826 805 826 0.98

15 15 8.4e-06 0.00055 21.3 2.4 1 23 832 854 832 854 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.0013	0.081	14.4	0.3	1	22	335	356	335	359	0.88
2	15	0.11	7.2	8.3	1.3	2	23	370	391	369	392	0.94
3	15	0.00093	0.06	14.8	1.7	1	23	394	416	394	416	0.95
4	15	2.4e-06	0.00016	23.0	2.4	1	23	422	444	422	444	0.97
5	15	4.6e-05	0.0029	19.0	4.3	1	23	450	472	450	473	0.96
6	15	8.7e-06	0.00057	21.2	1.6	1	23	479	501	479	501	0.97
7	15	0.0079	0.51	11.9	2.8	1	23	507	529	507	529	0.97
8	15	1e-06	6.7e-05	24.1	0.5	1	23	535	557	535	557	0.98
9	15	3.7e-06	0.00024	22.4	1.6	1	23	563	585	563	585	0.98
10	15	0.021	1.4	10.6	1.3	2	23	676	696	675	696	0.96
11	15	0.033	2.1	10.0	2.3	3	23	725	745	724	745	0.93
12	15	8.6e-06	0.00056	21.2	2.7	2	23	749	772	748	772	0.92
13	15	0.013	0.82	11.3	1.0	5	23	780	798	779	798	0.95
14	15	1.6e-05	0.001	20.4	0.9	3	23	806	826	805	826	0.98
15	15	8.4e-06	0.00055	21.3	2.4	1	23	832	854	832	854	0.99

Sequence Information

Coding Sequence: ATGAATGATTCGTGCTTGGTATCATCCTGCAAGGTACCCTGCCCTCCAATGCATAAATTTCCTAAGGATCGTAAAAGAGCCCTACAATGGATGGAGGCAATATGTAGGACTGATTTAGCTAAGCTAGATCAAAATCAATTAGATTGTAGGCGAATATGCTCCCTACACTTCAATCCggagttttattataaaactaattataagcGGCTTTTGAATACGGCTGTTCCTGTGATACAATTCTATCAATCAAAATATGATCAAAATACAAGTAACACTAGTATTGCATCATTGCCAGTAAATGTGGATGAATGTCCTAGCCCAAATATTTCAATAATGGAGATGTCACATTTCTTAACTCCAAATATTGAAACTGAATGCTTATATTCTGCTCTAAAATGGGATATTTGTAGAGCTTGTTTGTGCGAAGAGCCACAATTTCAACCAATATTCAGTTCTGCGGGCTCCTCTAAAACTATGCTGTCGGAAATGATGATGTTTTGTACAACACTACAGGTATCTGAAAACGATTCGTTTCCACAACAATTATGTTGTGGATGTGTTCAGCAACTATGCAATGcatatgattttaaattaaaatgtgagAGATCATTTGAAACTCTTAAACAGATGCAAACTAAACATTTTGGAGAAGGGATTGAAAATAAACAGTCTGTTGATATTAAACCTGAATTAGATATTGATCGTATAAATGATACTAATATTATCACAGCCAATGTTGAAGCAATTCTAGACGAAAgcatttataaacataatttacGTTCTTCTCCCGTTCCTTCTATAAACAATGTAGCAACtgaaaaacagaaaatagtTGACGAAGTAAAAGTCAGAAAAAGTTCAACCCgtttaaagaaaaaacatttGAACAGTACCACTTTGAAAAAAGTTGTTAATGATACTGAAGTTCAAAATAAAACAGCAGACGAAGAAAACAATGTTGAAAGTCAatctaaagaaataaagaacagtaacttaaaaaaacatatttgtcCAGAATGTGGAAAAACATTTGAGTCTATAAAAAGGCTTGAAAGTCATAGGGCTTCCATGGCCCATAAGAGAAATCAGCCCgggaaaacaattaaaacatgtTTAAGATGTAGAAAGTATTTTGAAGATCCTGCAGAATATTTAGAACATGTTAAAAGCCATCATGTTTACCTTTGTCCTGACTGTGGACATGTATGCAGGAGCAAAAACGGATATAAAGCTCATTTGGCAAGTCATTCGAATTTGCAACCGCACGTTTGTGATGAATGCGgtAAAAAGTATAAAAGTCAATCGTCTCTTCAGGCGCATAAGCGAAACCATACTGGAGAACGAAGATATTCTTGTCAACattgtgaaaaaagatttattaCTTGGAATAGTATGACAAGTCACATTAGAATTCATCATACAAAAGAAAGGAAGCACGTATGCAGCGTCTGTTCAAAAACGTTTACAATATCAGGCAATTTGAAAATACATATGCGACAGCATACTGGAGAAAAACCATATCCATGCAGTGAATGTGATATGAGCTTTAAATCGCATAGAGGTAGAAAATATCACATGGTTAAGCATACTGGAGAAAGAAACTATCCGTGTACTGTGTGTAATAAAAGGTTTGGTCGACCTAATaacttaaaacaacatatgGTGACACATACTGGAGAAAGAAATCACGTCTGCAATATATGTGGTCGAGCATTTACACAGGCACACGTTTTACGGGGCCATATGCGCACACACCCCGAGAACGTTTTAGTAGACTCAAATAGTCAAATTGAAATAGCTGAAGGTAACGAATTAGATATGACAAATAATCAAGTATCTGATGAACGATCAAAAGAAGATGTAGCAGAAACTGATACAAATTATCACGAAAAAGGTTTTGTTGAAACTGATAATAAAGAGAAGAACCTTCAAAAGAACAAATTATGTTCTATGGTACCAACGAATAAAAAAAATGTGGATTCAAATAATGTTAAGTTAGAAAAAGTGCAGTACCTACCTATAACTAGCTGTCCTTTATGCCATGAAACTTACACTTATAGAGAACTAGCAGTGCACAAAAGAACACATCCCAATGCGTGCTGGAAATGCAACGTTGATTTTAAAAGCGTAGAAGAACACAAAGAGCATGTTAAAGATCACGAAGAAAATAATTGCTCTGAATGTGGGAAAATTTTCACGAGCAAAAGATTATGCAAACAACATGAAATTATTCACGCCAAAGACAAATGTTTGTGTATAATTTgtggaaagaaatttagtacCCCATCTAATTTAGCTGCTCATCACCGAAAGCATACTAGAGAGCAAAGATATGATTTGTGTGATTCCAAATTCAAACAAAAGTCAACATTAAATATGCACATGTTCAAGCACACCGGAAACAAACGTGTCTTTTGCAAAGTCTGCAACAAAggatttgttaaaaattataatttaaaagtgCACATGGTGACGCACACTGGAGAAAAGAACTATTCTTGTTCTGTGTGCAACAAAGGGTTTACACAAGCACATGTTCTGCGGACTCACATGAAAACACATTCAGACAATGCATCTACCAGGAAAACACATTGA
Protein Sequence: MNDSCLVSSCKVPCPPMHKFPKDRKRALQWMEAICRTDLAKLDQNQLDCRRICSLHFNPEFYYKTNYKRLLNTAVPVIQFYQSKYDQNTSNTSIASLPVNVDECPSPNISIMEMSHFLTPNIETECLYSALKWDICRACLCEEPQFQPIFSSAGSSKTMLSEMMMFCTTLQVSENDSFPQQLCCGCVQQLCNAYDFKLKCERSFETLKQMQTKHFGEGIENKQSVDIKPELDIDRINDTNIITANVEAILDESIYKHNLRSSPVPSINNVATEKQKIVDEVKVRKSSTRLKKKHLNSTTLKKVVNDTEVQNKTADEENNVESQSKEIKNSNLKKHICPECGKTFESIKRLESHRASMAHKRNQPGKTIKTCLRCRKYFEDPAEYLEHVKSHHVYLCPDCGHVCRSKNGYKAHLASHSNLQPHVCDECGKKYKSQSSLQAHKRNHTGERRYSCQHCEKRFITWNSMTSHIRIHHTKERKHVCSVCSKTFTISGNLKIHMRQHTGEKPYPCSECDMSFKSHRGRKYHMVKHTGERNYPCTVCNKRFGRPNNLKQHMVTHTGERNHVCNICGRAFTQAHVLRGHMRTHPENVLVDSNSQIEIAEGNELDMTNNQVSDERSKEDVAETDTNYHEKGFVETDNKEKNLQKNKLCSMVPTNKKNVDSNNVKLEKVQYLPITSCPLCHETYTYRELAVHKRTHPNACWKCNVDFKSVEEHKEHVKDHEENNCSECGKIFTSKRLCKQHEIIHAKDKCLCIICGKKFSTPSNLAAHHRKHTREQRYDLCDSKFKQKSTLNMHMFKHTGNKRVFCKVCNKGFVKNYNLKVHMVTHTGEKNYSCSVCNKGFTQAHVLRTHMKTHSDNASTRKTH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01136919;
90% Identity: iTF_01136919;
80% Identity: iTF_01136919;