Basic Information

Insect: Panorpa germanica
Gene Symbol: -
Assembly: GCA_963678705.1
Location: OY783215.1:2826371-2828563[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.035 2.3 9.9 0.9 3 23 272 293 271 293 0.95

2 13 0.0017 0.11 14.0 3.4 1 23 297 319 297 319 0.97

3 13 0.00069 0.045 15.2 2.7 2 23 327 348 326 348 0.96

4 13 8e-06 0.00052 21.3 0.4 2 23 355 376 354 376 0.97

5 13 0.015 0.98 11.0 1.7 1 23 382 405 382 405 0.95

6 13 0.00018 0.012 17.1 2.3 1 23 411 433 411 433 0.98

7 13 0.0002 0.013 17.0 3.8 2 23 456 477 455 477 0.95

8 13 4.6e-05 0.003 19.0 1.1 1 23 481 503 481 503 0.96

9 13 4.6e-06 0.0003 22.1 1.7 1 23 509 531 509 531 0.98

10 13 6.3e-05 0.0041 18.5 1.8 1 23 539 561 539 561 0.97

11 13 3.6e-07 2.4e-05 25.6 3.0 1 23 567 589 567 589 0.98

12 13 6.4e-06 0.00042 21.6 0.5 1 23 595 617 595 617 0.98

13 13 0.00019 0.012 17.0 0.2 1 23 623 646 623 646 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.035	2.3	9.9	0.9	3	23	272	293	271	293	0.95
2	13	0.0017	0.11	14.0	3.4	1	23	297	319	297	319	0.97
3	13	0.00069	0.045	15.2	2.7	2	23	327	348	326	348	0.96
4	13	8e-06	0.00052	21.3	0.4	2	23	355	376	354	376	0.97
5	13	0.015	0.98	11.0	1.7	1	23	382	405	382	405	0.95
6	13	0.00018	0.012	17.1	2.3	1	23	411	433	411	433	0.98
7	13	0.0002	0.013	17.0	3.8	2	23	456	477	455	477	0.95
8	13	4.6e-05	0.003	19.0	1.1	1	23	481	503	481	503	0.96
9	13	4.6e-06	0.0003	22.1	1.7	1	23	509	531	509	531	0.98
10	13	6.3e-05	0.0041	18.5	1.8	1	23	539	561	539	561	0.97
11	13	3.6e-07	2.4e-05	25.6	3.0	1	23	567	589	567	589	0.98
12	13	6.4e-06	0.00042	21.6	0.5	1	23	595	617	595	617	0.98
13	13	0.00019	0.012	17.0	0.2	1	23	623	646	623	646	0.96

Sequence Information

Coding Sequence: ATGGATCATATGTTTTTAAGAATGTGCAGACTTTGTTTAAAGACTGAAGATGATTTATTTCCAATCTTTCCagaaaacaataaccaaataattactttaataacaGATTGTACAGTTTTagatgTGAAAAAGGAAGACGGTTTTCCCCAAAATTTATGCAAAATGTGTTTAGATCAGcttgaaaatttttatatatttagagaACAATGTAAAGAAACTAGCATAATGCTAAAGACTTCATACAAACAGTTTGCAAGATTAGAAAGAATATTTGAACATCCGTATAGTAAACAATCGATAGCGGATAAAAAATTATTGCCCTTTAAAATTACATCCTTAGCATTTGGAAGTTGTTCTAATAATTGCATTTTAAGGAAAGCAATTGAATGCTTTAGCAATATCGATTCTAAAACAGAACAAGTACCACAAAATGAAAAGCGAATTACTCGACAACGTACTGTACAAAAACAAAGAGAAAATGCAAATAATATTCCAGAATTCAATGGAAATTCAGAATGTATACAGGAAACGGAAATGAGGAATATGGAAGATGCTCCGCAAATATCATTTGAAACAGAAATAGCACTAGATGTAAAATCTGAAGATGATTTAAAAGAATTGGAAGAGAATTATAGTTGTGAAGAATATTCTCCAAGCTGTGAAGAACCCGAAAGTAATGATATAGATGATGATTATACAGAGGGATATACAGTCAAAAGAAAAAAGCGTCGCTTGTTAAATTCAACAAAAAGAAATTCTATTAATGTGCCTAAGagtaatagtaaattatcaacATCAGAAAAGCTAGAAAATTGTTCGGATTGTGATTTTCAGTTTGAGTCTACTGAAAAGTTACTTATTCATAGAAAGCAATTACATAAAAGAAGATATGCATGTCATTACTGCAACAAAACTTTCAAATCGGAATCTATAAGAAAGATACATGTTCGAACTCATAGGCCTGAAAATGAGACCATACAGTGCGAAATTTGTAAGAAAAAGTGTCGATCCAATAAGGCATTGCGGGCGCACAAAGTAACCCACAGTGgagtaatgaaaataaaatgtacaaCATGTCTGAAGGAATTTTCCAGTCCAGCAAATTTGAGACGGCATTTAATGATTCACACAAATGAACGACCGCATATGTGCCATTTCTGCGGAATGAGTTTTAACCAAGCTGTAGCTAGGGACAACCATATCATGGTTAAGCATTCACCAGAAAAGGTGCATCGATGTAAATTATGTACAATGCGATTTGAAACATCGGAACAGTTGGAAGAACATATGGAAAAACACGCACAACGAAGTGAagaaaaaaatcaacaaaaccaCCAGCTGGATCCTACAAACACTCCTACGTTACACTGTGACAGTTGTAACAAAGATTTTTCTACTCACGCCAACTTAAGACAACATATGAACTGGCACATCAAACCGTATTTGTGCAACGTTTGTGGTAAAGGATACGGAAATAGACACGCTCTAAAAAATCATGAACGAACACATACAGGCGAAAAACCTTTCGAATGTAACATTTgtcaaaagaaatttacaatgaaTGTTTTATTAAAGTCACATATGAAAAGTCATGCTGGTGAAAGCGCAAAAAAATTTGCGTGCCCTTATTGTCCAAAGAAATTTACCTTGCAATCTACTATGAAGACGCATACATATACCCACACTGGAGAAAGACCTTTTCCATGCTCgATGTGTGATAAAACATTCAGTCAAAATGCGCATCTTCGTACACATATGTATACACATACAGGGGAAAAGAAACACGTCTGTCCAGAATGTAACAAGGCGTTTGCTTTGAAAGAAGGATTGAGGTATCACATGATGACACACACTGGAGATACTCCATTCATTTGCGGTGAATGTGGTAGGGGTTTTTACATTCCGTACAAGTTAAAAGTTCATATGTTAAAATCTCATGGCATTGAAATGCCCATCGAAAAAAAGTAA
Protein Sequence: MDHMFLRMCRLCLKTEDDLFPIFPENNNQIITLITDCTVLDVKKEDGFPQNLCKMCLDQLENFYIFREQCKETSIMLKTSYKQFARLERIFEHPYSKQSIADKKLLPFKITSLAFGSCSNNCILRKAIECFSNIDSKTEQVPQNEKRITRQRTVQKQRENANNIPEFNGNSECIQETEMRNMEDAPQISFETEIALDVKSEDDLKELEENYSCEEYSPSCEEPESNDIDDDYTEGYTVKRKKRRLLNSTKRNSINVPKSNSKLSTSEKLENCSDCDFQFESTEKLLIHRKQLHKRRYACHYCNKTFKSESIRKIHVRTHRPENETIQCEICKKKCRSNKALRAHKVTHSGVMKIKCTTCLKEFSSPANLRRHLMIHTNERPHMCHFCGMSFNQAVARDNHIMVKHSPEKVHRCKLCTMRFETSEQLEEHMEKHAQRSEEKNQQNHQLDPTNTPTLHCDSCNKDFSTHANLRQHMNWHIKPYLCNVCGKGYGNRHALKNHERTHTGEKPFECNICQKKFTMNVLLKSHMKSHAGESAKKFACPYCPKKFTLQSTMKTHTYTHTGERPFPCSMCDKTFSQNAHLRTHMYTHTGEKKHVCPECNKAFALKEGLRYHMMTHTGDTPFICGECGRGFYIPYKLKVHMLKSHGIEMPIEKK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -