Pger007582.1
Basic Information
- Insect
- Panorpa germanica
- Gene Symbol
- -
- Assembly
- GCA_963678705.1
- Location
- OY783205.1:1863684-1867987[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.069 4.5 9.0 3.3 2 23 237 259 237 259 0.96 2 17 0.32 21 6.9 0.1 1 23 270 293 270 293 0.90 3 17 3.7e-05 0.0024 19.2 1.5 1 23 299 322 299 322 0.95 4 17 0.048 3.1 9.5 1.6 2 23 330 351 329 351 0.91 5 17 2.5e-05 0.0016 19.8 1.4 3 23 363 383 361 383 0.96 6 17 0.00068 0.044 15.3 2.9 2 23 387 409 387 409 0.95 7 17 4.9 3.1e+02 3.1 3.5 1 23 415 438 415 438 0.95 8 17 0.34 22 6.8 0.3 1 23 445 471 445 471 0.86 9 17 9.6e-06 0.00062 21.1 2.4 1 23 732 755 732 755 0.94 10 17 0.00022 0.014 16.8 0.2 2 23 761 782 760 782 0.96 11 17 3.4e-06 0.00022 22.5 1.0 1 23 840 862 840 862 0.96 12 17 6.1e-05 0.004 18.6 1.3 1 23 870 892 870 892 0.98 13 17 0.00037 0.024 16.1 0.4 3 23 899 919 898 919 0.99 14 17 5.7e-06 0.00037 21.8 0.8 1 23 925 948 925 948 0.97 15 17 0.00014 0.0088 17.5 3.8 3 23 956 976 954 976 0.95 16 17 5.9e-05 0.0038 18.6 1.7 1 19 982 1000 982 1004 0.93 17 17 0.0032 0.21 13.2 1.7 1 23 1010 1033 1010 1033 0.96
Sequence Information
- Coding Sequence
- ATGGAGAATTTAAtcttaaaatttgataaaatatgtaGAACATGTTTGAATGAAAATGACAATATGCAGCCTGTAAAAAACTTGATCAAAACTGCACAAAATACTGTTATTGTTATTACAGATATGCTTTTTTTATGTACGCAAATACAGataTCTGATGAGGATAATCTTCCTTCACAAATTTGCATGGAATGTATCTGCAAAGTACGCGATGCTTACTTTTTTAAACAGCATTGTCAACAGAATGAAGCGAAATTGAAACAATTATTGTCGGAAAATTCCAATGTGGAATACTTAATACAAGATCGGTCAGACTGTGaagaaaataatgataattttcTTACGAGTTACGAAGATGATTCAAATTCAGCCGCCGGAAGCACTGCTATGAATATCAGTAATTATATTATTGAGGAATCAGAAAATAATATAGCAGAAACCGTCAACAGTACAGATAAAGCTGAGGAAATTCAGGTTCAACTAGAGGAAGCAGTAATTGTTAAGCAACCAATAAATCAGAATGTTAAAATTCCTAATGTTGAAAGAAGtagaaaagaaattagaatagCCCCAAAACCTATAACACCGTACATTATGGAGTCTGGTGTTCCAACGTTATCTAATTGTAATAAACATGAAGACTTTAGGAGTGGGGTACTTTTTACAAGTGCAGAAAATGGAACTGAAATGACTTTGAACCTGGGGGAAGAATGTAAAATATGTGGTtgcaaatttttaaatgaaaccaCCTTACGCTCCCACCTGAGATACAAGCATGACTTAAATGATATTCCACTTGACACCAAATACACCTGCGATGTTTGTAATGCAGAATTTCCAATTtatgataaattaaatgaacATAATTTGTTAGAACATTTTAAAGCTATAAGTTTTCCATGTAGTATTTGTAACATTGAATTTACTCACAAAAGTTTATTGACTCGACATAAGAAGGCCGAACATTGTAAAATTCTGGACAATTTAACGTGTAATATTTGTCATAAACGATTTGAAACTGTAAAAGGATTAGGTGTTCATAAGTCATttcacaatattaataaaacacaagaagaGAATGTATGTTGTAAGATATGTGACAGAACTTTTAATGTGCCAGCGAATTTAACATACCACATGAAATATCATAAAGCTAATGTATGCCATTATTGCAACAATGGTTTTTGTAATATAGATGATTTAAAAAGACATATGAAAGAAGCTCACAGTGGTGACAGGCCTTACACGTGCACATATTGTATGAAACATTTTGCTATAAGGAAAATTCTTCTAAGACATAAGAGGTTAAGCCACAAAGTATTTCaggatatttatttttgtggAGTTTGTCAGAATAATAACGTAGGCTTTATTAATAGCGATTATTTAACGAAACATATTGAAAAATATCATATGAATATTGAATCTGATGATAATGTAACGGAGTTTTTGGAAGAAAATAATGAGGATTTATCTGATTTATcggaatttataaatttacccAAAGTGTCTACTGAACAGATAACTTTGCATGAAGACGGTAcgataaatatacaaataaatgatAAAGAATATGAGGAACCATCACAGTTATTGACAGATTTATTAGTAGTTGATGAAAACGTGAATGAATTCAATGTTAAAGAAGAACCAATTGGAGAAATAAACAATGAAAATCCAATAGATGTGGTGCAAACAATAGATTATAATTGTACAGAATTAGAACATGAAAGTGTTAcggaaaataatacaaatattatttacaccgACGAAACAACGGATGAGACTAACTTCATGAACGGTGATATTATCCAATATGACGAGGAAAATCAACAGTATATCATTTATAGCagatataatataaatgacGAAACAACTTTGGAACAACATGACGAGGAGCTATACTTGCCTGATGGCAATATTACCAATGGTGAAAACAATTATGatgataaaaatttacaaaacatagATTGTTCTTTGGAACAAAATATTGATGCCGCAAAATCattggaaaatttaaaaacGTTGGAGGCTAAAGCAGTGGAAAGTTCAGAGGAAATAAAAGATGGAATGGTACGTATTATACGAAGTGATGATACCGGATATGTCAGCCATACTAAAACGGATGTAATCTTTGATGAAACGGATTACGCTGGACCAGTTACTTTTAAAAAACCGTTAACAGAACAACGATATAAATGTCCAAAATGTGATGAGATTTTCACAAGGCAATTTAGTTTAACTAGACACTTAGCACACACTCACAACGAATTTTGTTTAGTTTGCAATACATGTGGATTATCCTTTAATAGATTACCCTTATTAGAAACTCATAGAAGAGAACACATGGACAGCAGAAATAATTCACATGTAAATGGGGTAGATGTACAAGACTCTGATAGTTACGACCAAATTATAACAGATTTCAATGACGATATTTCGGATTCAAAATCTGAAACGCAAAGTgccattcaacaaataactgagacAGAAGCAGATActagatatattaaatgttttacttgCGAAATATGCGATAAGACATTTCAACGACGAGTAAATTTAGAGAGGCATAGAGCTCAGCATGTTAGTATTGAGCATGTAAGCTATGTCTGTTCTATATGTGACAAGTTTTTTTCAGATTCTTTAGAATTGTATAAACACAAGAAATTGCATAAGGAAGAACACTTATTGTGTAACCTTTGCGATCGTGCCTTTACAACTATTGGTGgattaaaataccatttaaaaaCACACACAGGTGCAAAACATCATTCTTGCCCCTTTTGTGGGAAGAAATTTACGGCAAACATTAATTTGAACGCTCATATAAAGACTGTACATTCCGAAGTTAAACCCCACCTGTGCAATATTTGCGGGAACCGATACACCACTGCAGATCACCTTAGAAAACACATGACGAGTCATACGGgTGAAAGAAGATTTTTATGTAATACATGCGGCCGAAGCTTCAGCCAAAGTTCTCATCTAACTCAGCATTCATGGATCCACAGTGGAATTAAACCATTCGCCTGCAAGTTATGCAGCAACAAATACACTTCTACATCTGCATTAAAGaaacacattaaaaataatcatgaacctaaatcaaaataa
- Protein Sequence
- MENLILKFDKICRTCLNENDNMQPVKNLIKTAQNTVIVITDMLFLCTQIQISDEDNLPSQICMECICKVRDAYFFKQHCQQNEAKLKQLLSENSNVEYLIQDRSDCEENNDNFLTSYEDDSNSAAGSTAMNISNYIIEESENNIAETVNSTDKAEEIQVQLEEAVIVKQPINQNVKIPNVERSRKEIRIAPKPITPYIMESGVPTLSNCNKHEDFRSGVLFTSAENGTEMTLNLGEECKICGCKFLNETTLRSHLRYKHDLNDIPLDTKYTCDVCNAEFPIYDKLNEHNLLEHFKAISFPCSICNIEFTHKSLLTRHKKAEHCKILDNLTCNICHKRFETVKGLGVHKSFHNINKTQEENVCCKICDRTFNVPANLTYHMKYHKANVCHYCNNGFCNIDDLKRHMKEAHSGDRPYTCTYCMKHFAIRKILLRHKRLSHKVFQDIYFCGVCQNNNVGFINSDYLTKHIEKYHMNIESDDNVTEFLEENNEDLSDLSEFINLPKVSTEQITLHEDGTINIQINDKEYEEPSQLLTDLLVVDENVNEFNVKEEPIGEINNENPIDVVQTIDYNCTELEHESVTENNTNIIYTDETTDETNFMNGDIIQYDEENQQYIIYSRYNINDETTLEQHDEELYLPDGNITNGENNYDDKNLQNIDCSLEQNIDAAKSLENLKTLEAKAVESSEEIKDGMVRIIRSDDTGYVSHTKTDVIFDETDYAGPVTFKKPLTEQRYKCPKCDEIFTRQFSLTRHLAHTHNEFCLVCNTCGLSFNRLPLLETHRREHMDSRNNSHVNGVDVQDSDSYDQIITDFNDDISDSKSETQSAIQQITETEADTRYIKCFTCEICDKTFQRRVNLERHRAQHVSIEHVSYVCSICDKFFSDSLELYKHKKLHKEEHLLCNLCDRAFTTIGGLKYHLKTHTGAKHHSCPFCGKKFTANINLNAHIKTVHSEVKPHLCNICGNRYTTADHLRKHMTSHTGERRFLCNTCGRSFSQSSHLTQHSWIHSGIKPFACKLCSNKYTSTSALKKHIKNNHEPKSK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -