Basic Information

Insect: Panorpa germanica
Gene Symbol: -
Assembly: GCA_963678705.1
Location: OY783215.1:16282096-16286806[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.079 5.1 8.8 0.4 1 23 306 328 306 328 0.95

2 12 0.03 1.9 10.1 1.1 1 21 333 353 333 357 0.91

3 12 0.00015 0.0096 17.4 0.9 1 23 440 463 440 463 0.93

4 12 1.7e-07 1.1e-05 26.6 1.1 1 23 469 491 469 491 0.99

5 12 0.00048 0.031 15.7 1.8 1 23 498 521 498 521 0.96

6 12 1.5e-06 9.9e-05 23.6 3.4 1 23 527 549 527 549 0.97

7 12 7e-05 0.0045 18.4 0.2 1 23 555 577 555 577 0.97

8 12 2e-05 0.0013 20.1 1.2 1 23 583 605 583 605 0.98

9 12 1.1e-07 6.8e-06 27.3 0.3 1 23 611 633 611 633 0.98

10 12 9.2e-06 0.0006 21.1 4.2 1 23 639 661 639 661 0.97

11 12 6.4e-06 0.00041 21.7 1.5 1 23 695 717 695 717 0.99

12 12 1.7e-07 1.1e-05 26.6 3.7 1 23 723 745 723 745 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.079	5.1	8.8	0.4	1	23	306	328	306	328	0.95
2	12	0.03	1.9	10.1	1.1	1	21	333	353	333	357	0.91
3	12	0.00015	0.0096	17.4	0.9	1	23	440	463	440	463	0.93
4	12	1.7e-07	1.1e-05	26.6	1.1	1	23	469	491	469	491	0.99
5	12	0.00048	0.031	15.7	1.8	1	23	498	521	498	521	0.96
6	12	1.5e-06	9.9e-05	23.6	3.4	1	23	527	549	527	549	0.97
7	12	7e-05	0.0045	18.4	0.2	1	23	555	577	555	577	0.97
8	12	2e-05	0.0013	20.1	1.2	1	23	583	605	583	605	0.98
9	12	1.1e-07	6.8e-06	27.3	0.3	1	23	611	633	611	633	0.98
10	12	9.2e-06	0.0006	21.1	4.2	1	23	639	661	639	661	0.97
11	12	6.4e-06	0.00041	21.7	1.5	1	23	695	717	695	717	0.99
12	12	1.7e-07	1.1e-05	26.6	3.7	1	23	723	745	723	745	0.97

Sequence Information

Coding Sequence: atggatGAGATTGTAACTCTTTACGATTCTATAGTTTGTAGATTATGTTCTGTTGAAAGTGAAAATGGTTCACTTTTGTATGTTTCGGAAAATGACGAAAATGATTTAAGCAcgaacataaataaatatttgcctATTAAAATATATGACGATGGCAAATTACCTCGTTCAATTTGCCCTGGATGTTGCTTACAACTAGAAGGTACATCCCAATTTTTTGAGTTAATAATACAAGGCCAAGAAACCTTAAGAAAGTTGCTTCAGATTGAGGTggagactttaaaaaaatataatagtcaaGAAGTCTCTGCAGATGAcaatctttttaattttaatggtaaAGTTTCCATATCAACGTCAGTAAATACTTTAAAACATGTTACTTTTACATTATACATATTGCATCTCTTTTTTTTCGCAGTAAGAGAAGATGGAACATGTTATCCCACAGATCATGATCTTGCTCTTAAGATATCTGGTGACAAGCCAAGAAAGAAAAGGGGTCGGCCCCCAAAAATTCGTCTAGATGAACAAGTCGATCAAGTAGTGTTAGAAgagGATACGACTCAACAGCGAAATGAAAATGAATCTACTAAACCAGAAGTAGAGGAGGAGCTAGATGGGGAAGGAAGAAGAAAACGTAAAAGAAAAGCCCCACTAAGATATAATGAAGCTGTCCAAGGTAAAGAATTGGAACGTATTTATGTGGAGGAAGGCGTTATTGGCGAAGAAGAAGCAGATGAGGATGAATATAAAGATGGTAGCAAAATCGAAGATTACGATTTGCAGCCTGATGATAATGAAATAATAGGGCATTTAGAAACAAAAGAAGGTCACGATCTAGGTGAACTTGTTGTAGCAAATCGATATAGAAACAAACCAAGACCAAAAGTCTGTCGTAAAAAGAAATTTCGATATTATTGTGATATTTGTGGGCGTGGATTTCTGCAACAAGCGAGATGGTTGAATCATAAGACTACTCATAGAGATGTCCAGTACGAGTGCCGTGAGTGTTTGAAAAGGTTCCGACACATAGAACAGTTAGTTGAACATTACGCTAATACAAATCATAAGGAGGGTGGAATAATTGAAACACTTGGAAATGTTTTGGATGAAAATAATGAATACTACTTACCAGAGAAAGATGACATACTTTATGCAACTGAAAAACAAGCTGATCCCAATTCCCTAGAAGAAATAGaaacattaaatACTAAATTGAAGAAAGTTTCGAATGAAACTGTAACTAGAATAAACAACGAAACTGATTCATCGATAAATCTATCCATCGATGACATAACCAacgaatatgataaatttagaTGTGGCGAATGCAATAAGTCCTTCACTTCTAAACAAAGTCTAGATattcattttaaagcTGTTCATCAGAACGAGCGACCGTTTACGTGCGAAATATGCGATAAATCGTTTGCTTACCAAACATCATTAAAGAATCATATGCTAACTCATATGGAAGCCAAATTAACATATCCTTGTGATATATGCCACAAGGTTCTAAATCATCCTAGTTCTCTCAATTACCATAAAGATACAGAACATAATAATGACTGGCGGTTTGTTTGCAACAAATGTGGAAAATCTTTTAGACATAAACAATTATTACGAAGACATCAGGTGGTACATACATCTGATAGACCTTTTCCGTGTAAGACGTGTCCTGCTGCTTTTAAAACTAAAGCCAATCTACTAAATCATGAAAGTACACATACTGGAATTAAGAAATATCCATGTACAATATGCGATCAAAACTTTGCTCATAAAACTAGTCTAACACTTCATTTACGATGGCATGCAGgCGATAAACCATTCGAATGTTCAGTTTGTCAGAAAGCTTTTAGTCAAAATGGAAATCTTCAAGAACATATGAGGATACATACAGGAGACAAGCCATTCGCTTGTGAACACTGCGATCGTAGATTTACCACGAGCTCCCAATACAGATTACATCTTAGGAGGCATACAGGTGAACGGCCATGGGCTTGTATATATTGTGATAAACGGTTCCTACATAAAGACACATGGAAATGCCACTTACGGAGGCATCAAGGAGATAAACCATTTAAGtgTAGTTTTTGTGATCGTTCTTTTTCTGAACAATGggcattaaaaaaacattggCGTTCGCACACTGGAGAAAAGCCGCATATATGTCAGCAGTGTGGAAAATCATTTTCCGATtcgtcaaatttaaataaacatagaaagacaCATAAAACTGAAAATACAAACATTGAGGGACCCccaaaactatttattaagTTACCCAAGTCTGACGATGTTGATGTTCAGTCGGATAACGTGTGGAATatgatacaaggacaaataaaATCAGCAGACGgttataatatttcaaatgaaaatattgaaaatcccGATCATCAGCAAATTCAAGTTGTTACTTATGATGATGATGTAAATCAAACTGACTTACAAAATGCTGTATATGTGACTTATAATCAATTAGAACCAGGAGATTCAAGTGGAACAAAATTAATTCAAGTAAACGATGTTAGATCATTAATAAAACCATTAGCAAATACTGGTATAAAAGGAGGTGAAATTGAACAAGCGGGACAAACAGAGGAGAGAACAGCATACTCAAACCACGAGGAATTTGAAGTATCTGACGAGGATGGCAATCCTCTTCACCTCTCTGTTAATGAAGAAGAGCAAATAGCAATATCCACTGTGTCTGGAGAGTCGATTCAGGTGAccatggatggcagaaatattCCTATACAACTAACGGCAGAACCAGGACAAACCTTGTCAGATGATCTCCAACTGCAAATTCAAAGAGCACTCCAGCAACAGTTTGGAATGAACGAGaaTGGTTTGGGAgaaaattcaaatgatacacaaGATCTAAATGAAGAACAAACGATTGAAATAATCACAAAGGATGGAGAACAAGTTGCGTATAGTCAGtggatataa
Protein Sequence: MDEIVTLYDSIVCRLCSVESENGSLLYVSENDENDLSTNINKYLPIKIYDDGKLPRSICPGCCLQLEGTSQFFELIIQGQETLRKLLQIEVETLKKYNSQEVSADDNLFNFNGKVSISTSVNTLKHVTFTLYILHLFFFAVREDGTCYPTDHDLALKISGDKPRKKRGRPPKIRLDEQVDQVVLEEDTTQQRNENESTKPEVEEELDGEGRRKRKRKAPLRYNEAVQGKELERIYVEEGVIGEEEADEDEYKDGSKIEDYDLQPDDNEIIGHLETKEGHDLGELVVANRYRNKPRPKVCRKKKFRYYCDICGRGFLQQARWLNHKTTHRDVQYECRECLKRFRHIEQLVEHYANTNHKEGGIIETLGNVLDENNEYYLPEKDDILYATEKQADPNSLEEIETLNTKLKKVSNETVTRINNETDSSINLSIDDITNEYDKFRCGECNKSFTSKQSLDIHFKAVHQNERPFTCEICDKSFAYQTSLKNHMLTHMEAKLTYPCDICHKVLNHPSSLNYHKDTEHNNDWRFVCNKCGKSFRHKQLLRRHQVVHTSDRPFPCKTCPAAFKTKANLLNHESTHTGIKKYPCTICDQNFAHKTSLTLHLRWHAGDKPFECSVCQKAFSQNGNLQEHMRIHTGDKPFACEHCDRRFTTSSQYRLHLRRHTGERPWACIYCDKRFLHKDTWKCHLRRHQGDKPFKCSFCDRSFSEQWALKKHWRSHTGEKPHICQQCGKSFSDSSNLNKHRKTHKTENTNIEGPPKLFIKLPKSDDVDVQSDNVWNMIQGQIKSADGYNISNENIENPDHQQIQVVTYDDDVNQTDLQNAVYVTYNQLEPGDSSGTKLIQVNDVRSLIKPLANTGIKGGEIEQAGQTEERTAYSNHEEFEVSDEDGNPLHLSVNEEEQIAISTVSGESIQVTMDGRNIPIQLTAEPGQTLSDDLQLQIQRALQQQFGMNENGLGENSNDTQDLNEEQTIEIITKDGEQVAYSQWI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -