Pger013852.1
Basic Information
- Insect
- Panorpa germanica
- Gene Symbol
- su(Hw)
- Assembly
- GCA_963678705.1
- Location
- OY783207.1:24511734-24514769[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00036 0.023 16.2 0.5 1 21 34 54 34 55 0.95 2 13 0.0016 0.1 14.1 1.9 1 23 114 137 114 137 0.98 3 13 0.00024 0.016 16.7 1.3 1 23 144 166 144 166 0.98 4 13 0.00018 0.012 17.1 1.8 1 21 172 192 172 193 0.93 5 13 4.2e-06 0.00027 22.2 0.3 2 23 205 226 204 226 0.96 6 13 0.0012 0.078 14.5 1.3 2 23 237 258 237 258 0.97 7 13 5.2e-07 3.4e-05 25.1 0.9 1 23 264 286 264 286 0.98 8 13 0.0024 0.16 13.5 1.0 1 23 292 314 292 314 0.96 9 13 3.7e-05 0.0024 19.3 3.0 1 23 320 342 320 342 0.95 10 13 4.5e-05 0.0029 19.0 1.7 1 23 348 371 348 371 0.95 11 13 6.3e-06 0.00041 21.7 0.3 3 23 379 399 377 399 0.95 12 13 7.3e-08 4.8e-06 27.8 0.9 1 23 405 427 405 427 0.99 13 13 1.1e-05 0.0007 20.9 4.6 2 23 434 456 434 456 0.96
Sequence Information
- Coding Sequence
- ATGGACGTCGATAATAATACTATTCAAGAAGAAAATACCGATCAAATGGCTGAATCAAGAACAATTCTTAAGAGTGAATTAAAACCTGCTTTTATTGAGCATGTTTGTGGCATGTGTTCAAAAGTGTATACTACGTCAGTGGGTTTAAAACGTCATTTAAAGTTTTGTAATCTTACAAGCATGGAGTCCggtttgaaaattaataaagacGAAGACGTACAATCCGCAGAACCTTTCGTGTTAACAGAATATGATATTATTGATGCTGATGATGAGCCCCTTCAGAGAGATTGTTTTTGTTGTGGTGATAACTTGAAGACTGCGCATACGtatggctcatataaatgtacaagtTGTTCTAAGCTGTTTTTAACAAATGCTTCTTTGAAACGTCATATGAATTCTATGCACTATGACGGCAATAATGTGTTCGAGTGCACTGAGTGTGAAGTCAAGTGCCCAGATCAGTCCACCCTAAATAAACACCGTGCTACCCACACTGGAAATAAAGTCTTCGACTGCGTGAGATGCAATAAGACTTTCACCAGGAAGTACCATTTAGATCGCCATGTTATGCAGACCGGTTGTGATGGCACTGAGAGAACCACTTTGCCATGTCAgGTCTGCGGTCGTTTGTTCACCAGGAAGGACAATCTCCGGGAACATCTCCGTGCTCATATGGGGGAATCCAAACGAAAACAAGCTCGCGTCTGTCCTCATTGCAATCACGTGTTCTATGGAGTCACTgcatttaatatacatattcgaACGCATACGGGGGAGAAGCCCTATTCATGTACAATGTGCCCCAAAGCCTTTTCTTCTCAAAATGCTTTGAAGAAGCACACGCGTATTCATACTGGAGAACGTCCTTACGAATGCATAGTGTGTTCTAATAAATTCACTGCAAAAGAGACATTGAATCGTCATATGAAAACTCACACGGGAAACAAACCACATAAGTGTCAATATTGCGGAAAAGCTTTTATTCAAGCAACTCAGTTACGTGCTCATGTCTTCCACCATACAGGAGAAAATGGATTTACTTGTCAAACCTGTGGAAAAGCATTCAATAGACGCTCTAGgtTAACAATGCATGTCAAATTTATACACGAAGGAGAAAAACCACTAGATTGTGACGAATGTGACAAAACGTTTGTTAGGAAAGAGGAATTGGCCCGTCATAAGATGCTGCACACCGGTGTCAAagaatTTAAATGTGCTGTCTGCAATAAAGCATTCGCAACTAAATCATCACTTCTTACACATATGCGTACTCATGTTCAAGAAGAACCACGCAGTTGCCACGAGTGCGGTAGAGCTTTTATTAGACAGGATTGTCTTTACAGACACATGAGGTCTAAACATAGAGAACAGCTTGAGCAAATTATTGCAGATGCTGAGAAAAAGAAATTGCAATTAGCCTTACTTAATAACGATAATgttcaaataccaaataatCAAAATCAAATTGAAGCAGTGGAGATAGATGACTTGGAAGATGTTGAAGAGGAGGAGGAAGAAGCTGAAGAAGAAGTTGAGGATGAGGATATGgaagaagatattaaaaatgaagaGGAGGAGGAAGATTATGATCATATGGCAGAGAATGGCTGTATGTCTGAAGAGACTCTTCGAAAAAGTATAAGATCACTTCTATCTTTGTTAGTTGATGAAGAGACTTTGAAAGGATTTGGTTGGCCGGAAGCCACTATTGAAAACATATTGGACGACGTTATAAATCGTTGTGGTCATAGTCCGGCCAGCGCAGAAGACTTCGACGCCGTTTCACGTTTAAGGGAGAATACCAAGTTGTTATTTACAGTAGTTATTGatgataaatcaattaaaacctTATTGAATAATCAAACAGTGGATGAAGTGATTCTCCACGTATTAAAGttgtcaaaaatataa
- Protein Sequence
- MDVDNNTIQEENTDQMAESRTILKSELKPAFIEHVCGMCSKVYTTSVGLKRHLKFCNLTSMESGLKINKDEDVQSAEPFVLTEYDIIDADDEPLQRDCFCCGDNLKTAHTYGSYKCTSCSKLFLTNASLKRHMNSMHYDGNNVFECTECEVKCPDQSTLNKHRATHTGNKVFDCVRCNKTFTRKYHLDRHVMQTGCDGTERTTLPCQVCGRLFTRKDNLREHLRAHMGESKRKQARVCPHCNHVFYGVTAFNIHIRTHTGEKPYSCTMCPKAFSSQNALKKHTRIHTGERPYECIVCSNKFTAKETLNRHMKTHTGNKPHKCQYCGKAFIQATQLRAHVFHHTGENGFTCQTCGKAFNRRSRLTMHVKFIHEGEKPLDCDECDKTFVRKEELARHKMLHTGVKEFKCAVCNKAFATKSSLLTHMRTHVQEEPRSCHECGRAFIRQDCLYRHMRSKHREQLEQIIADAEKKKLQLALLNNDNVQIPNNQNQIEAVEIDDLEDVEEEEEEAEEEVEDEDMEEDIKNEEEEEDYDHMAENGCMSEETLRKSIRSLLSLLVDEETLKGFGWPEATIENILDDVINRCGHSPASAEDFDAVSRLRENTKLLFTVVIDDKSIKTLLNNQTVDEVILHVLKLSKI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -