Pger028787.2
Basic Information
- Insect
- Panorpa germanica
- Gene Symbol
- -
- Assembly
- GCA_963678705.1
- Location
- OY783217.1:1294104-1299662[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 6.6e-05 0.0043 18.5 1.8 3 23 174 194 172 194 0.95 2 15 0.0002 0.013 17.0 0.3 2 23 199 221 199 221 0.94 3 15 0.0012 0.078 14.5 0.3 1 23 374 396 374 396 0.97 4 15 4.2e-06 0.00027 22.2 4.4 1 23 402 424 402 424 0.97 5 15 0.00055 0.036 15.6 4.8 1 23 430 452 430 452 0.97 6 15 5e-05 0.0032 18.8 3.6 1 23 458 481 458 481 0.95 7 15 0.00083 0.054 15.0 3.1 3 21 494 512 493 514 0.95 8 15 0.13 8.1 8.1 5.7 1 23 520 542 520 542 0.98 9 15 3.7e-06 0.00024 22.4 0.5 1 23 548 570 548 570 0.96 10 15 3.3e-06 0.00022 22.5 0.6 1 23 576 598 576 598 0.98 11 15 0.00073 0.048 15.2 3.8 3 23 606 626 604 626 0.95 12 15 3.2e-05 0.0021 19.4 1.6 1 23 632 654 632 655 0.96 13 15 0.31 20 6.9 0.0 10 23 669 682 667 682 0.93 14 15 9.2e-07 5.9e-05 24.3 0.2 1 23 688 710 688 710 0.99 15 15 0.00032 0.021 16.3 0.3 1 23 715 738 715 738 0.96
Sequence Information
- Coding Sequence
- ATGGAGGATATTGGAGAAATAAATATAGACCGGGCCTGCCGGGGATGTTTAACAGAAGAAGGTGAAATGCAACCTCTATTTGCTGTCAATTCATCAAAACAATCGAAAATTTCGGAAATGTTATTGACATGTACTCGAGTAGAGGTACTGGAAAATGACGGATTGCCAGTTCGGCTTTGCGGTCGCTGTGTTACCCAAATATATAatgcttttttatttaaacaacaatTTGAACAGTGTGATGCAAAGTTGAGAAAATACATTGCACAagcaaaaaatatttcaacCAAATCCATTAAGCAAGAAACAAGTCAATCTCAAAATGTATCTAATGAAATACTAGATTTTAATTCACTATACGCTacagatataaatattaaattagaggATTCTCAGGAAACAAACAATATATGTAATAATGTGGAAAGTTCTCTCATTAATTTAGATTCAGATGATTTGTGTAATATTAACGAAAAAGGAACCCAAACTGACTTCAGTGAGTTCTCCCTTATATTGGCGTGTTCTAAATGtgataaaaaattcaaaaccaggGAAGAATTAAAGACTCATAAGTTACTTCATAAGGACGATCCACAATGTACGGAATGTGGTGAAACATTCGCCAAACCCTTTCAGATGCAAAGACATTTGATTCTATCTCATACATCAAAACATAAATCCAGATTTCAATCCAGTTCAAGTTTACAAAAATCAAAACCAGAGTCagttattattaatgattttaatcAAGACACATCATTTGACGATACAGAAATGTTATGTACTGAACCGGATATTGATATGCTAGATTTAGCAAACGTAAAAGAAGAATCCAACAATTTTGATAGTTCATATGATCATTCAGATATAGACAATgatgatgataatgataatgatcaGATTGGTTTTGATGATGATTATGAATCTGATAATGATGAGATCAGACCAAAGAAATTTCAAAACCCCTTTAGGAAGAGTATGGCTAAAGTTCCTGCAAAAAAACGTGGCAGACCAAGGAAAATTATGGATGATGTAAAAATGGAGAAATCTGATATATTGAATCATGATTTAGTTAATCTTGACttagtaaaaaaagaaaatatggaGAGGTCCGGTGAGTTCCCCTGCGTACATTGTAATAAGGTATTAACTACCGCCATTGGCTTGGAGATACATACGCGACAACATACCGgcgttaaattatttaaatgccAAATATGTGAAAAGACATTTACAAGGTCCACTCATTTGAAAAGGCATGAAGTTACACATTCCACTGTGAAAGCATTTAAGTGCACAGTCTGCGAAAAAGGATTCAACAGaatgGATCATCTCAATTTACATATGTTTCATCATTCTGATAAAAAACCCCATGAGTGTGATATTTGCCAAAAAGGCTTTACTAGAGCTGAACATCTTAGAAAACATAAAGAATCTCGTCATGGGGACAAAATTATGCCAACACCGAAATCAGAATTTTGCACAGTTTGTAAGAAAGgaTTTACAACAgctaaatatttacaaatacacATGCGTTGCCACAATGGAGATAAAACTTATACTTGTAAAATTTGTTCTAAAAATTTTAACTGCAAGGCTCATCTTGTGGAGCATAATAAAAGTCATTCCAATGAGAAGCCCTTCTTATGTTCTGAATGTGGTCAAAGGTTCATTCGAAATGATTACCTCGTTATTCATATGCGTCGACATAAAGGTGAAAAACCATATAAATGCCGTTATTGTGGAAAAGGTTTTCCTCGTGCTACAGATCTCACCGTGCATGAACGTTACCACACTGGAGAGAAAACACATCTTTGTACAATATGTGGAAAAGgtTTTACCCGCCGTTGTAATATGGTGGTACACTTCAGAATTCATACTGGTGAAAAACCTTACGTGTGTCAGTATTGCGAACAAGGATTCGCCCAAAGCAATGACTTGAAATCGCATGTTCGCAGGCATCATACAAATGAGAGCATTATTAAATGTTTCACGTGCGTAGGTTTTCAACGTGCCTATAACCTCGTCGTTCACATGCGAGTACATACTGGGGAGAAACCATATGTGTGTCCTCATTGTGGAAAAGCTTTTGCTCAAGGAAATGATCTCAAGGCACATGTGCGAAGACATACTGGAGAAAGGTACAACTGTGAAGTTTGTGGCGAAGGCTTCATTCAAGGGTATCATCTCACACAACATAAAAGAGCAGCTCATGGTATTGAATCAACATCACATATTCGTCGTGTTGAAAAACATATTCCTCTGCTATCAGAAGCGTCTATTATCAATACCCCAAATACTATTACAATGCAAAAACCACTTATTAAAACTGAAATAATTGTACCAATACCTCAAGATGCcggtataaatattaattcaacTTCTGATAACAATTTGACACAGAATCCTGTGCACATCATTGAAACAAATTCTTTACCTTCTAATTTACAAACTGCCGCGGCTATTTTTGAACACAATAAGCAAGAAGATTTTCCAAACTAG
- Protein Sequence
- MEDIGEINIDRACRGCLTEEGEMQPLFAVNSSKQSKISEMLLTCTRVEVLENDGLPVRLCGRCVTQIYNAFLFKQQFEQCDAKLRKYIAQAKNISTKSIKQETSQSQNVSNEILDFNSLYATDINIKLEDSQETNNICNNVESSLINLDSDDLCNINEKGTQTDFSEFSLILACSKCDKKFKTREELKTHKLLHKDDPQCTECGETFAKPFQMQRHLILSHTSKHKSRFQSSSSLQKSKPESVIINDFNQDTSFDDTEMLCTEPDIDMLDLANVKEESNNFDSSYDHSDIDNDDDNDNDQIGFDDDYESDNDEIRPKKFQNPFRKSMAKVPAKKRGRPRKIMDDVKMEKSDILNHDLVNLDLVKKENMERSGEFPCVHCNKVLTTAIGLEIHTRQHTGVKLFKCQICEKTFTRSTHLKRHEVTHSTVKAFKCTVCEKGFNRMDHLNLHMFHHSDKKPHECDICQKGFTRAEHLRKHKESRHGDKIMPTPKSEFCTVCKKGFTTAKYLQIHMRCHNGDKTYTCKICSKNFNCKAHLVEHNKSHSNEKPFLCSECGQRFIRNDYLVIHMRRHKGEKPYKCRYCGKGFPRATDLTVHERYHTGEKTHLCTICGKGFTRRCNMVVHFRIHTGEKPYVCQYCEQGFAQSNDLKSHVRRHHTNESIIKCFTCVGFQRAYNLVVHMRVHTGEKPYVCPHCGKAFAQGNDLKAHVRRHTGERYNCEVCGEGFIQGYHLTQHKRAAHGIESTSHIRRVEKHIPLLSEASIINTPNTITMQKPLIKTEIIVPIPQDAGININSTSDNNLTQNPVHIIETNSLPSNLQTAAAIFEHNKQEDFPN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -