Pger033447.1
Basic Information
- Insect
- Panorpa germanica
- Gene Symbol
- ZEB2
- Assembly
- GCA_963678705.1
- Location
- OY783221.1:13805407-13809481[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 4.1e-06 0.00026 22.3 1.7 2 23 106 127 105 127 0.97 2 17 0.00067 0.043 15.3 1.4 1 23 132 155 132 155 0.98 3 17 3.7e-06 0.00024 22.4 3.1 2 23 194 215 193 215 0.98 4 17 0.00016 0.01 17.2 1.5 1 23 220 243 220 243 0.97 5 17 0.81 52 5.6 1.5 2 23 329 350 328 350 0.95 6 17 4.2e-05 0.0027 19.1 0.9 1 23 367 389 367 389 0.98 7 17 1.1e-05 0.00072 20.9 2.3 1 23 397 419 397 419 0.97 8 17 0.00016 0.01 17.2 0.8 1 23 446 468 446 468 0.98 9 17 0.89 57 5.5 0.9 1 23 569 592 569 592 0.88 10 17 9.5e-05 0.0061 18.0 2.0 1 23 623 645 623 645 0.98 11 17 0.00033 0.021 16.3 0.2 1 23 651 676 651 676 0.98 12 17 0.018 1.2 10.8 1.2 1 23 683 705 683 705 0.95 13 17 0.00014 0.0088 17.5 2.2 1 23 711 733 711 733 0.98 14 17 0.00056 0.036 15.5 0.1 1 23 739 761 739 761 0.98 15 17 0.00046 0.03 15.8 1.4 1 23 767 789 767 789 0.94 16 17 0.00081 0.052 15.0 2.7 1 23 795 817 795 817 0.98 17 17 3.9e-06 0.00025 22.3 5.2 1 23 823 845 823 845 0.99
Sequence Information
- Coding Sequence
- ATGTTAATGTCTTGTACAAAATTAAAGATATCACACGGTGATGGATTGCCCTCAAAAATCTGCCTTCAATGCATTGCTGAAGTAAGTCaagcatttacatttaaaactcAAAGTGAACGTGCTGAAACTCTTCTGAGGACATATTCATTAGGTGCAGATGTGTTAAATGACAATTCTAATGAAATTAATATCAGTTATGAAAATGAAAAGTTTGTGGACAACAAGGATAACCAAGGTATCCAAGAAGAAGAGGAAGAAAACGTGAATGATGTTAATGATAAAACAAATCGAGAAAATTTGACTACAAGAAAAATGAAATGTGGTTTTTGTCCTAAACGTTTTAAGAATAGATACGAATTGCAGCGTCACCAGAATATTCATCTCGGAGTGAAGTTCTCGTGTTCTGCTTGTGACAGACAATTTACACAAGAATCCAGCCGAAATTATCACATGCGAACTGTTCATGGTACGAATGAAAGAACGGAACAAAGTTTAATGCAGAAGGAGGAAGAGCTGAAAGATGATGTTGCAAAACTTCGCTATCGCATTCATTTTGGTGGAGTAACAAACGATCCAAAAAAGTGTAATTTCTGTTCAAAACGTTTCAGAACTAAATATGAGTTAATTCGGCATATGAATATTCACTTGGGTGTAAAGTTTAAATGTTACCGTTGTGATAAGAGATTTACCCAAGCTTCCGGTCGAAATGTACACATGAAAAATGCTCATGGCATCCGCAGTAGAAAGAaagcaattattacaaaatcttcATGTCTTGATGAAAATATAAATGCCAGCATAGAAAATTCTACACCGGACGGGTTAGCTGTTATAAaattagaagatattaaaaaagaacACGGTGATAAGGAATGTGTAATAATTACTGATATCAAGGAAGAGAATTATGATCCCGAATTTCTGTTACCTCTATCAGAATCGGAGCATTTTGAATcagttgaatatttaaaagaagaagTCTGGGTCTGCGATATATGCACTGAAGGGTTCCATTGTAAAGATCAGTTATTGACTCATTTAGTAAGCCACGATACTGATAACAGTGTAGtaacaaatattaacaaaccGAAACCTGAATTTAATTGTCCCAAATGTTCAAAGTCGTACCAAAGTCAATTAAGTTTAAATGCCCACATGAAAATCCATAAAAATGAACACACTTTGCCTTTTGTATGTAGTTTTTGTAACAAAAGCTTTCGTAATCAGACAGATTTAAATAATCATTCAAAAGTACATACAATTGTAGAGACATTTGACGACTTTAATGAGTCTGAAGACATAAAAGACTTCGAGGGTCTATCGGAAACTGTAACATTTCAATGCAGCTTATGCCCGAAGTTTTTCAAGACTACAAACGCTCTAAGAGGCCATGTGAAGGTTCATAAGGAACATAACCACGGTACCGTATTCACCTGCTCCAGTGATCCCGATCTAAGTACGgagaataataaaaaactaGTAGTAGAGGAATATATTGTGTTAAATTCTGATAACGAGAAGTTTGCATATGATAAAACTTGCACTGATTATCAATTTCTGGACGATCCTGATGTAAATAATGGTGTGACAGAATTTGCACCATTGGAGGACTCTGAAGATTTAATTAACGAAACTTTTGTAgtgaatataaatgaagatggGTCAGACACTGttgataatttaataatggCTGACGTGGATACGTTTCAATGCGATATTTGTTTAGTTTGTTTTGAAACGACTGATATTTTATTGAGACATAAGATCGATACGCATTTATCCGAAACGTTCACGCATTCTAGGTCTGCCTTTGTGTTTGAAGATGACAccaaaaaaattaagaattatGACGGATCCGATAAGAAGTTTACTTGTGGCGTGTGTGGTCGAGGATTTACTAAACATGTTTATATGAAACGGCATATGATGTTGCACACTGGAGAGAAGCCGTATAAATGTCCCGAAGCGGAATGCACGGCGGCCTTCAGTAATAGTGGGATGCTCATAAGCCATAAACGGAAGAAACACAAAACTTCATCGAATAGTTTCTTGTGTAGTAGATGTGGAGATACATTCGTCTCTAACGACAGGCTGAGGGAGCACACGAAAAGACATTTAAATCAAAGAGATTTTCCGTGCCTCTATTGTGaaaagaaattttttacGAAAAATACTCTTCGAATTCACACTAGGATTCATACTAATGAAAAACCATACATGTGTCAATTTTGTGGAAAAGGTTTTGCGCAAATGGGAGATATGCAGCTCCATGTTAGATGGCATACGGGAGAAAAACCTTATAAATGCAATTACTGCGACAGAAGGTTTACTACCACTGGGAATCGAAGAGATCATGAAGTCATTCATTTAGAGGAGAGgaACTTCAAGTGTTCCGTCTGCAGCAAGGCCTTTAAAGCGCAGAGAACATTGAAAATGCATTTTAGACAACACACGGGTGAGCGACCATATACATGTGAGGTCTGCAATAAAAGTTTTCGAAGGCAACATCATGTGAGGATACATATGAAAGTACATGGAATACATGTGCCACCCAAACCCAAGAACTTctga
- Protein Sequence
- MLMSCTKLKISHGDGLPSKICLQCIAEVSQAFTFKTQSERAETLLRTYSLGADVLNDNSNEINISYENEKFVDNKDNQGIQEEEEENVNDVNDKTNRENLTTRKMKCGFCPKRFKNRYELQRHQNIHLGVKFSCSACDRQFTQESSRNYHMRTVHGTNERTEQSLMQKEEELKDDVAKLRYRIHFGGVTNDPKKCNFCSKRFRTKYELIRHMNIHLGVKFKCYRCDKRFTQASGRNVHMKNAHGIRSRKKAIITKSSCLDENINASIENSTPDGLAVIKLEDIKKEHGDKECVIITDIKEENYDPEFLLPLSESEHFESVEYLKEEVWVCDICTEGFHCKDQLLTHLVSHDTDNSVVTNINKPKPEFNCPKCSKSYQSQLSLNAHMKIHKNEHTLPFVCSFCNKSFRNQTDLNNHSKVHTIVETFDDFNESEDIKDFEGLSETVTFQCSLCPKFFKTTNALRGHVKVHKEHNHGTVFTCSSDPDLSTENNKKLVVEEYIVLNSDNEKFAYDKTCTDYQFLDDPDVNNGVTEFAPLEDSEDLINETFVVNINEDGSDTVDNLIMADVDTFQCDICLVCFETTDILLRHKIDTHLSETFTHSRSAFVFEDDTKKIKNYDGSDKKFTCGVCGRGFTKHVYMKRHMMLHTGEKPYKCPEAECTAAFSNSGMLISHKRKKHKTSSNSFLCSRCGDTFVSNDRLREHTKRHLNQRDFPCLYCEKKFFTKNTLRIHTRIHTNEKPYMCQFCGKGFAQMGDMQLHVRWHTGEKPYKCNYCDRRFTTTGNRRDHEVIHLEERNFKCSVCSKAFKAQRTLKMHFRQHTGERPYTCEVCNKSFRRQHHVRIHMKVHGIHVPPKPKNF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -