Pger023223.1
Basic Information
- Insect
- Panorpa germanica
- Gene Symbol
- -
- Assembly
- GCA_963678705.1
- Location
- OY783212.1:6133666-6137611[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.029 1.9 10.1 3.5 1 21 327 347 327 349 0.95 2 14 2.9e-05 0.0019 19.6 1.7 1 23 356 378 356 378 0.99 3 14 1.1e-05 0.0007 20.9 2.1 1 23 384 406 384 406 0.97 4 14 0.0072 0.47 12.1 0.1 1 23 418 440 418 440 0.95 5 14 0.0077 0.5 12.0 8.4 1 23 446 468 446 468 0.98 6 14 7e-05 0.0045 18.4 1.9 1 23 474 496 474 496 0.98 7 14 0.00079 0.051 15.1 1.7 3 23 507 527 505 527 0.96 8 14 8e-06 0.00052 21.3 0.3 3 23 535 555 533 555 0.96 9 14 2.1e-06 0.00013 23.2 5.7 1 23 561 583 561 583 0.96 10 14 3.7e-08 2.4e-06 28.7 0.3 1 23 589 611 589 611 0.98 11 14 2.1e-05 0.0014 20.0 1.3 1 23 617 639 617 639 0.98 12 14 0.00023 0.015 16.8 2.6 1 23 645 666 645 666 0.97 13 14 2.3e-07 1.5e-05 26.2 2.6 1 23 672 694 672 694 0.98 14 14 6.7e-06 0.00043 21.6 1.7 1 23 700 722 700 722 0.98
Sequence Information
- Coding Sequence
- ATGGATGAACAATTAGATGGTGTTGCAATAAATGCTTTAGAGGTTAGTCTTGACAATACAATTGTGCATTTAGGTGCAGTCGATGGTAATGCTGTTATAGAATTAGAAGAGTCTTCCAATAACCTCAATGACAAGGTTGAATCTACGCCTTCCTTAGGCCACGGTGAAGCAACAGAAATTGGTATAGCCAACGAGTGCGAAGTAACAACACAAGATATTGAAGTTGAAATCGTTTTACCTGAACAATTTTCACGAATTTGTCGAACATGTTTGAGAGAGAAGACAGATTTGAGACCCTTGTTCGAGTCATGCGTTGCCGACATGATAATGGGTTTTGCTGCAGTTACGATCACCGAAACCGATGGTCTTCCAAGTCAAGTTTGTTTTTCATGCCTAGTTTACATAAACCgatgttattatttcaaacaacaaTGCGAAAAATCCGACAACACTTTACGAAATTACGCAACGCAGGGTTGCCTGGAAGGAATGAAGCTGGAGTCAAACCCAATATGCCATATTCCGTGGGCTGAAGAAACAGTGGAGTACAGttttgatGATAAGGATATTCACGTTGAATTGAAGCCTGATTTTATGGAAAATTCTAAAGAAATAAGAAATCCTGATGCTTTGAAACCAGACTCAGATAACGTAATTACGGAAGACGAATTTGCTCATGAACAAAATGCTCAAGAATGCAATTCAGAACCCGAAAGTGTATGGGAAGAACAGTTGTTGTCTCAACGAGTTAAAAAAGgTAGAAGGAATAAGATAAAAAATGTTGGAAGACCTAAACGAAAAACAAGGAGAGTGAAACAAGAAATCGAATataatgatgatgatgatgatgatgacaaTGAAGATGATTATGTTGTTGAAACATTAGATCCACAGACGGATGAAGATATTCCTGATGTAAAACCAGTTAGAAAAAAAGCAAGAAAAAGAAGATTAGGAGAATATAGTGAAGAGAATGAATTTTCCTGTAGTTATTGCAGTAAAAGCTTTTTGCAACAAGAAGATTTAGACCGTCATGTAAGATGCCATTCAAGGAAAAGTAAAAGTTATAAATGCgagatttgttttaaaaaattcccTGACCAAAGAAGACTAACACGTCACGAGAGAATTCACTTGGATATTAAACCACATATCTGTAAGATTTGTAAGAAGgGTTTTAATGAATCCGGCGATCTTTCTAGGCATATGCGTAAACATACCGTTTTAGAAGGTGAAATTAAGGCATTTCCATACCCTTGTGAAGAGTGTCATTTAGGATTTACACTACAAAGTGATTTAGATATACATTCAGCCATTCATTCTAAAGATGGAAAACATACCTGTCACCATTGCAAGAAGGAATGTGCTTCTGCATTGCAATTAAAACGCCACGTGAGGATTCACCTTACTGATAAGCCACATAAGTGTAAAGTATGCGGAAAAGGTTTTCCAGAAATGGGCTCTTTGACTAGACATTTTAGGAGACATACTGGTGAGACGAGAGAAAAGAAACATCTTTGTACAGTCTGCGGCAAAGGTTACTACGACAGTCATTCGTTAGGAATTCATGTACGTACCCACACTGGTGAGAAGCCTTGGATATGTAGTTCATGTGGAAAAGCATTTATTGATTCCCGTTTATTAAATTCACACATGAAAACACACTCCACTGAAAAACCACACGCTTGTAATATGTGCGATAAAAAGTTTACACATCAATCTACACTTACTACACATATCAGAACTCATACTGGGGAAAAGCCGTACATTTGTTCTGTCTGTGGAAAAGCTTTTATTCAAAGTTCTAATTTGTCGTTACATATGCGGACACATTCGGGTGAAAAGCCATATAATTGTAGTGTTTGTAATAAAAAGTTTGCATCATCTTCAACACTTACAATGCATAATAGAATTCATACGGGCGAAAAACCTTATTTTTGCAGAGTGTGTGGAAAGCGctTTGCTAGACATGATTTAACTGCTCACATGCGAACTCATACTGGAGAGAAACCGTTCATTtgcaatttttgtaataaacgtTTTACAACAAGTGGTCAATTGAATCAACATATGAGAACTCATACaggAGAAAAACCTTACGTTTGTGCAATCTGTGGCAAAGGATGCACCAGTAGTACATACttaaaaaaacacataaaatcTCATAGTGGTGCAACTCAAATAATACGATTATCACCTATAGAAACAACATCGGGAAATGTATCTACCCTAAATTCACAAGTACTAAATGTTAGTAGTGTATTAACAAATCCTGTTCTAACAGTGGGCACTAATGTGTTAAATATAACAGGGTCTAATGTAGCAACTCTAGAAGTTCCTGTTCTTAGTTTAAATAATGGTACAATTAATATGacaaatataacaacaaatgGAATTGAGCCTGGGACAATAGTAACTACTACAAATGATAATAACACCAATGctacaaatattacaacaagTACTAATGCATTAGTATCTGATAACAAATTATATCATTCGATTGACTCTACGTTAATAAGACTTCAACATGTACCAACGGGGCATTTTCCAATAAGTGATATTACACGTTAA
- Protein Sequence
- MDEQLDGVAINALEVSLDNTIVHLGAVDGNAVIELEESSNNLNDKVESTPSLGHGEATEIGIANECEVTTQDIEVEIVLPEQFSRICRTCLREKTDLRPLFESCVADMIMGFAAVTITETDGLPSQVCFSCLVYINRCYYFKQQCEKSDNTLRNYATQGCLEGMKLESNPICHIPWAEETVEYSFDDKDIHVELKPDFMENSKEIRNPDALKPDSDNVITEDEFAHEQNAQECNSEPESVWEEQLLSQRVKKGRRNKIKNVGRPKRKTRRVKQEIEYNDDDDDDDNEDDYVVETLDPQTDEDIPDVKPVRKKARKRRLGEYSEENEFSCSYCSKSFLQQEDLDRHVRCHSRKSKSYKCEICFKKFPDQRRLTRHERIHLDIKPHICKICKKGFNESGDLSRHMRKHTVLEGEIKAFPYPCEECHLGFTLQSDLDIHSAIHSKDGKHTCHHCKKECASALQLKRHVRIHLTDKPHKCKVCGKGFPEMGSLTRHFRRHTGETREKKHLCTVCGKGYYDSHSLGIHVRTHTGEKPWICSSCGKAFIDSRLLNSHMKTHSTEKPHACNMCDKKFTHQSTLTTHIRTHTGEKPYICSVCGKAFIQSSNLSLHMRTHSGEKPYNCSVCNKKFASSSTLTMHNRIHTGEKPYFCRVCGKRFARHDLTAHMRTHTGEKPFICNFCNKRFTTSGQLNQHMRTHTGEKPYVCAICGKGCTSSTYLKKHIKSHSGATQIIRLSPIETTSGNVSTLNSQVLNVSSVLTNPVLTVGTNVLNITGSNVATLEVPVLSLNNGTINMTNITTNGIEPGTIVTTTNDNNTNATNITTSTNALVSDNKLYHSIDSTLIRLQHVPTGHFPISDITR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -