Pger030183.1
Basic Information
- Insect
- Panorpa germanica
- Gene Symbol
- -
- Assembly
- GCA_963678705.1
- Location
- OY783218.1:6969705-6974411[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 6.1e-05 0.004 18.6 3.1 1 23 163 186 163 186 0.97 2 19 9.3e-06 0.0006 21.1 0.1 2 23 215 236 214 236 0.97 3 19 0.00056 0.036 15.5 0.2 2 23 243 264 243 264 0.97 4 19 0.00011 0.0071 17.8 0.1 1 23 270 292 270 292 0.96 5 19 0.00025 0.016 16.6 0.2 1 23 298 320 298 320 0.98 6 19 0.23 15 7.3 1.8 1 23 326 348 326 348 0.96 7 19 0.0013 0.085 14.4 0.8 1 23 354 376 354 376 0.98 8 19 0.00086 0.056 15.0 0.8 1 23 382 404 382 404 0.97 9 19 0.0021 0.14 13.7 5.4 1 23 410 432 410 432 0.98 10 19 0.0037 0.24 12.9 2.3 1 23 504 527 504 527 0.96 11 19 1.4e-05 0.00093 20.5 0.2 2 23 550 571 549 571 0.97 12 19 0.00036 0.023 16.2 1.1 2 23 578 599 578 599 0.97 13 19 4.8e-06 0.00031 22.0 2.8 1 23 605 627 605 627 0.98 14 19 4.9e-05 0.0032 18.9 6.6 1 23 633 655 633 655 0.98 15 19 0.14 9.3 8.0 3.2 1 23 661 684 661 684 0.94 16 19 0.00057 0.037 15.5 1.3 1 23 690 712 690 712 0.98 17 19 8.5e-05 0.0055 18.1 2.6 1 23 718 740 718 740 0.98 18 19 0.0006 0.038 15.5 2.2 1 23 746 768 746 768 0.94 19 19 2.2e-06 0.00014 23.1 3.0 1 23 774 796 774 796 0.98
Sequence Information
- Coding Sequence
- atgaatacaagttttgaaattaataagaTTTGTAGAGCATGCCTAAACAGTAGTGATTCActgaaacatatttataattcgcaattaaaagatatttttaaaaacttaacaaaCTTGGAGaTAGTTGAAAATGACGGGCTTCCTTGTCATCTATGTTTAACATGTGTTGAGCGTCTGGAAATATGTAACTCTTTTCGACAGCTTTGTATTAAAAGCGATCATTTGTTCAAGGAAAGGAAGATTAATTTGGAGACTGCCACTCGCTCTTTGAAAAGCAATATACAAAATCCAGAAAACAATACAAGTGCAGTTTTTTCAAGAAGTACTTCATCCATACCACAGTTACAcgaattagtaaataaaaatgaagagtTTTCTTCTGAAATCGAAATTAAGGAGGATAGTCATTGTTTTTCCGAGGAGGAACCTATTATTAATCATAAAGAAAACGATAATCAAATAGACACGAAACGAGTAAAGCTATTACATACTTGTCAAAAATGTGATAAAAGTTTTGTGCTCCTCGATTCACTAAATAAACATATTCAGAAGAAACACCAACTTGAAGATGATACTAATAATAAACtcatatacaaaaagaaagaaaataaacaatcaaCTCGCAAATTAAAACTGAATCTTTCATGTCCTAAGTGCGGACAAGCTTTTAAAAAACCAGACAGATTAGAAGCTCATTTAAGAGTCCATGCAGGGAAGAAGCCTGAAGTATGTAAAGAATGTAACGGAGAATACGCAAATTGGAAGTCTTTAAAGTTGCATATGTTAACTCACACAGgcgttaaaaaatatgtttgcatAGAATGTGGTAAACGGTTTACATATCCAACAGCTTTGCGCATCCATGAAAGAATTCATAGTGGAATTCGGTCTTATATTTGTGATATTTGTGGAAATTCATTCCTAACTAGTACCAATTTAAAGttgCATATTGCTACACATAGCGAAGAGCGGCCATATGCTTGTGACACGTGCCCCCAGAAGTTCAAATGTGCTGCTACGTTACGGATGCATGTTTTTAGACACAGTGGAGTTAAGAACTTTATTTGTACATTATGTGCGCACAGATCAGCAACAAAGGGAGAACTGAATGCACATATGAAAACTCATAGTCAAGAAAAACCGTTTGCATGTTTAGtttgttctaaaaaatataaaacagcaAATGAATTAAATGTACATAACAGGAAGCATACAGGAGAACGTCCTTATAAATGTGATATATGTCACATGacttttacaatttcaaaagtacttaagcATCACAGGATGACACATACTGTTGCAAATCATAATTCTAAAGAAACTGTTGCAGATATTGTTTTAACAAAAGATGAAGAATATTGGAAAACCGAAGAAGAATCAGACCATTTGCATGAAGATACTATTCAAAATGATGATAGTAGTTTTCATTATGACTCTGACAGAGAAGACGAAACTAAAAATGAAGAGGCTGAGGAGAAAGCAATTATTAAGCAAAAACGTGCACTACATCCATGTCAACAATGTGATAAGAAATTTGCTCTATTAATTACACTAAAGAAGCATGTTCAAAAGAAACATCCAACttctgataataataataaaggctACAAAAAGAAACTATCACGCACTCTAATAGCAGATCTGTCTTGCCCAAAGTGTGGACAAGGTTTTAAGAAACAAGACCGTCTTGAAGCGCATTTACGAGTACATCAAGGGAAAAAGCCAGAAGTATGCACAGAGTGCAATGCTGAGTTTGACCATttacgaaatttaaaaatacatatgcTAAAACATCCCGGATTAAGAAAGTTTGAATGCTTGGAATGCGGTAAATGTTTTACTTATCAATCAAAACTTCGTCTgcatgaaagaattcatttggGTATCCGGCCATATATCTGTGACATTTGCGGAAAATCATTTCACACTTGCCATAACTTGAagttgcaTATGACTTCACATAGCGTTGAGAGACCGTACGCCTGTGAGTCTTGTCCTAAGAAATTTAAATGTTCTGCTTCATTAAGAACACACGTATTTCGCAGACATACTGGAATTAAGAACTTCATCTGTACATTGTGTGGCCATAGATCTACAATGAAAGGAGATTTAAAGGAGCATATGAAAATTCATAGCCAAGAAAAACCGTATGCCTGTTCGTTCTGccctaaaaaatttaaaaaggaaaataatttaacaactCATAATAGAACGCATACGGGAGAACGTCCTTATAAATGTGACTTATGCCCCATGTCATTCACAGCCTCTAAAGTGCTTAAACACCACAGAATGACACATACGGGTGAAAAGCCACACGTGTGCACTGTTTGTCATAGAGCATTTATACAAAAAAGTGCATTAAAAATACACATGAAAACTCACAACAGGCCAAAAGTTTCTTATTAA
- Protein Sequence
- MNTSFEINKICRACLNSSDSLKHIYNSQLKDIFKNLTNLEIVENDGLPCHLCLTCVERLEICNSFRQLCIKSDHLFKERKINLETATRSLKSNIQNPENNTSAVFSRSTSSIPQLHELVNKNEEFSSEIEIKEDSHCFSEEEPIINHKENDNQIDTKRVKLLHTCQKCDKSFVLLDSLNKHIQKKHQLEDDTNNKLIYKKKENKQSTRKLKLNLSCPKCGQAFKKPDRLEAHLRVHAGKKPEVCKECNGEYANWKSLKLHMLTHTGVKKYVCIECGKRFTYPTALRIHERIHSGIRSYICDICGNSFLTSTNLKLHIATHSEERPYACDTCPQKFKCAATLRMHVFRHSGVKNFICTLCAHRSATKGELNAHMKTHSQEKPFACLVCSKKYKTANELNVHNRKHTGERPYKCDICHMTFTISKVLKHHRMTHTVANHNSKETVADIVLTKDEEYWKTEEESDHLHEDTIQNDDSSFHYDSDREDETKNEEAEEKAIIKQKRALHPCQQCDKKFALLITLKKHVQKKHPTSDNNNKGYKKKLSRTLIADLSCPKCGQGFKKQDRLEAHLRVHQGKKPEVCTECNAEFDHLRNLKIHMLKHPGLRKFECLECGKCFTYQSKLRLHERIHLGIRPYICDICGKSFHTCHNLKLHMTSHSVERPYACESCPKKFKCSASLRTHVFRRHTGIKNFICTLCGHRSTMKGDLKEHMKIHSQEKPYACSFCPKKFKKENNLTTHNRTHTGERPYKCDLCPMSFTASKVLKHHRMTHTGEKPHVCTVCHRAFIQKSALKIHMKTHNRPKVSY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -