Pger014026.1
Basic Information
- Insect
- Panorpa germanica
- Gene Symbol
- -
- Assembly
- GCA_963678705.1
- Location
- OY783208.1:962261-963571[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.13 8.1 8.1 0.1 3 21 50 68 48 69 0.93 2 13 3.7e-05 0.0024 19.3 0.9 1 23 84 106 84 106 0.97 3 13 4.3e-05 0.0028 19.0 2.4 1 23 112 134 112 134 0.98 4 13 0.00011 0.0072 17.7 5.2 1 23 144 166 144 166 0.98 5 13 1.6e-05 0.001 20.4 1.1 1 23 172 194 172 194 0.96 6 13 1.2e-05 0.00077 20.8 0.6 1 23 200 222 200 222 0.98 7 13 3.7e-07 2.4e-05 25.6 1.5 1 23 228 250 228 250 0.96 8 13 1.7e-06 0.00011 23.4 1.6 1 23 255 277 255 277 0.98 9 13 1.5e-06 9.8e-05 23.6 1.1 1 23 283 305 283 305 0.97 10 13 3.5e-07 2.3e-05 25.6 3.0 1 23 311 333 311 333 0.99 11 13 2e-07 1.3e-05 26.4 0.9 1 23 339 361 339 361 0.98 12 13 1.9e-06 0.00012 23.3 0.9 1 23 367 389 367 389 0.97 13 13 2.3e-06 0.00015 23.1 2.4 1 23 395 419 395 419 0.93
Sequence Information
- Coding Sequence
- ATGGAAGAAAATTCACCAAGGTCTACCTCTGAAAATGTACAAAAAGAAATAGAGTACATAAAAATAGAAGAAGTTATTATCAAAGAAGAATTACATGATGAAGAAATGAAAGATAATTCGGATGAAACATCTCCATGGACTGTCAATTGCAGTGTCTGCAACACGACCTGGAGCGACTCTGCTAGCCTACAGGAACATTTAAATTCATCTCCAGAATGTCgagaagatattaaaatctGTGAAAAACTCTTCGTTTGCGAAGTTTGTGAAAAAATCTTCTACACACCTGGTGATTTTAAAAGACATTTGGAACACCACGTGATAAAAGGTGTATTTCCATGCGAATATTGTAAGAAAACTTACAAAACTAACACTGGTTTGGGTAGGCACACAAAAAAGCACGGACAAGATGGTTCCATCAAAAAGCGCTACCCTTGTGATCTCTGTCATAAAAGCTACAACAGAACCCACGATCTTGAAAGACATAAAAAAATGCACAGTCGCGTAAGAGTACATAGTTGCGATGAATGTGGTAAAACATTCATCGCAGCAAGTAAACTACAACGTCATAAAGTAACACATTTAAATGAGAAGCCATTCAGTTGTAACCTATGTAAAAAGTTATTTGCACGTGCTGATAGTTTGAAAGTACATCAAATAACTCACATGAAAAAACAACCGCACGCCTGCAACTTATGCAACAAGTCTTTCGCACGTGCAAGTTACCTAACTGAACACATGAACACGCATTTCGGAAAAACATTTCCATGCGATGAATGCGAAAAATCTTTCACGCGAATTAGCTATTTAACACAGCATAAAAAAACACACTTGGAAAATAAACCTTTTGTGTGCGATATTTGTTACAAAACATTTTCTAGGGCTGATAATTTAAAGCTGCATCGAACATCCCATTTAGAAGAGAAACCTTTTAAATGTGACTTATGTGACAAATCATTTACAAGGTCGAATAATTTGAAATTGCATAAGAACACACATAGTGAAAGAGATTTGTTTCAGTGTGGaatttgtgaaaaatcttttacGAGGTCTTATGATTTAAAAGTTCATCAAAATCTTCATAAAGAAGAGAAACAATATTTTTGTGATGAATGTGATAAGAGTTTTGCAAGTCCGAGATATTTAACGAAACATAAAGCTACACATTCTGATGTGAAACCGTATTcttgtaaattatgtaataagTCGTTTACGCAAAAAGTTAATTTGAGATATCATCTTAATACTTTTGTACACCAGGATGCAGGTCCTGATGTTCACACTCTAGAAAATGTACCGGAAACAGTTTGA
- Protein Sequence
- MEENSPRSTSENVQKEIEYIKIEEVIIKEELHDEEMKDNSDETSPWTVNCSVCNTTWSDSASLQEHLNSSPECREDIKICEKLFVCEVCEKIFYTPGDFKRHLEHHVIKGVFPCEYCKKTYKTNTGLGRHTKKHGQDGSIKKRYPCDLCHKSYNRTHDLERHKKMHSRVRVHSCDECGKTFIAASKLQRHKVTHLNEKPFSCNLCKKLFARADSLKVHQITHMKKQPHACNLCNKSFARASYLTEHMNTHFGKTFPCDECEKSFTRISYLTQHKKTHLENKPFVCDICYKTFSRADNLKLHRTSHLEEKPFKCDLCDKSFTRSNNLKLHKNTHSERDLFQCGICEKSFTRSYDLKVHQNLHKEEKQYFCDECDKSFASPRYLTKHKATHSDVKPYSCKLCNKSFTQKVNLRYHLNTFVHQDAGPDVHTLENVPETV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -