Pger023036.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Panorpa germanica
Gene Symbol
-
Assembly
GCA_963678705.1
Location
OY783212.1:3341597-3346763[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 19 0.012 0.8 11.3 0.6 1 23 152 174 152 174 0.93
2 19 0.0042 0.27 12.8 0.0 1 23 209 231 209 231 0.97
3 19 0.072 4.7 8.9 0.6 2 23 277 299 276 299 0.93
4 19 0.0092 0.59 11.7 0.1 3 23 306 326 304 326 0.96
5 19 1.7e-06 0.00011 23.4 1.7 1 23 331 353 331 353 0.98
6 19 0.00067 0.043 15.3 3.1 1 23 370 393 370 393 0.96
7 19 2.7e-07 1.8e-05 26.0 0.7 2 23 413 434 412 434 0.97
8 19 0.0087 0.56 11.8 0.5 1 23 440 465 440 465 0.94
9 19 1.1e-05 0.00073 20.9 5.2 2 23 471 492 471 492 0.97
10 19 0.00049 0.032 15.7 9.4 1 23 498 520 498 520 0.99
11 19 0.0016 0.11 14.1 0.7 1 23 526 548 526 548 0.96
12 19 5.9e-06 0.00038 21.8 0.3 1 23 554 576 554 576 0.98
13 19 3.3e-07 2.2e-05 25.7 1.6 1 23 582 605 582 605 0.97
14 19 0.0035 0.22 13.0 0.6 1 23 620 642 620 642 0.97
15 19 0.001 0.066 14.7 0.3 1 23 646 668 646 668 0.98
16 19 0.00014 0.0089 17.5 0.7 1 23 675 698 675 698 0.97
17 19 1.3e-07 8.2e-06 27.0 0.3 1 23 704 726 704 726 0.99
18 19 1.5e-06 9.5e-05 23.7 1.3 1 23 732 754 732 754 0.99
19 19 0.087 5.6 8.6 4.3 1 23 760 782 760 782 0.98

Sequence Information

Coding Sequence
ATGAATATTGAACAAATTTGCCGTACATGCCTGTTAAAAGGTAATGATTTTGTGTCTTTATTTTGTAAGGACGAAAAtggcaataaatattataatgaaatGATAATGTCATGGACAACTTTGAAGATTTCAGATAAAGATGGTTTGCCACAGATGTTATGTCCTCAGTGTGTAAATCAAATTTGTGCTACATATAAGTACCTCCAAAAATGTGAAAGATCGGATTTGTTGTTACGCGAACATTATAAATGTAGTTCCTTAGATGATTCACTTATAAAGGTAGATGATTTAAAAAGTTCTATCAATGAACATAATTTCAAACTTGAGGCTGGTTTCGGAACTGATGAGGCTGCTCACGACTCTGATGAATATGAGTCTACAGAACGAAATGATGAAGAATGTAAGAGTAAAACTCTGCCATTGAACAGATCTAATACACCTAAACAAAATGTATATCCGTGCAAAAAATgtgataaatatttcttaagctGGAACGACTTAAATGAGCATAATTTAGAACATCCCAAAAGTGATAAAATAAGCTGTAGGTTTTGCGAAAAGGAATTTGTACATATTAGGCATATCTTCCCACATATTATGAGGCATCATTCAGCTGCTATTGGCTTTAGTTGTGGTTACTGCGATGCAAATTTTACTAATGATGTGTCACTTGGAGCTCATATAATTTCACACGAAAGTAATGCCATTGCACCATCTAAAACTAATGGCGGAAAAGATACTGAACATTTGGAAGATGTAGATCTAAATAATTCTGATAGCATTAAGTTGGAACAACAAGGTCATGAAGATACTTCAGGTGTAGAATTAAGATGCAcagtatgtaatattttatttatgtcacAAAAGGAATGGAAAAATCATCAGTCAGAAAGCCATGCCGAAGATCAAATTATTTGTGAAGTTTGTCTACAATTGTTTGAAAGCGAAGAATTGTTAAATCGGCATATGAATATACATATTAAGAACGGATTTAACTGTCCTAAATGTcccaaaaagttttattatgaaAGAAATCTAAAAATTCATATCAGAACACATGGATCAGCTAAAAATTCCGGTACAGTTGATAAATCTGTTAGTAACAAACATAAATGTTCGGAATGTGGAGAAATGTTCAAATTGCGTCGTTTTCTACAAAACCATATAAAATTGAAGCATGGAGAACATTTAAATTCTGAAAACATTCAAACTGATAATAATTCAAGAAAAGATCAAGTATgtgatatttgtaataaaagttttCGAACGAGTGGGGATCTTCGCCGTCATATTACAACTCATGATCCAGATAAGCCATTCCATTGTCAAATTACTCGTTGCAAATGGAGCTTTGCCTCAGAACGTGATTTAGCGGTTCACATCAATGTCAACCACACTGATGGTAAAAATGAGTGCCATTTCTGCCAAAAAGTATTCAAACATCCACGAAATTTAAGACAGCATATGATAACACATAAGGAGGACAAGCGATTTACTTGCAAATATTGTACGAAAGgatTTAATCATTTGCATCACTTGACAAATCATGAGCGTACGCACACGGGCGATACTCCTTACTTATGCAGTGAATGTGGAAAAGGATTTGGAACTCGGGATCGTCTGACATTCCATATGCGTTTACATACGGGTGTTCGCCCTTTTGTATGCTCTTATTGCGGAAAAGCATTCACTATTGGAGCTTCTTTGAAGAATCATTTGAGAACACATACAGgaGAACGTCCTTTTATGTGTAGTCAATGCGGAAAGACTTTTACAGCCAAATTTAATCTTAATAAACATATGCGAGTCTTACACAATGTTGTTGATGGTGCCGTGATCGACGGCGAATTGCAGACTCACATATGTAGCGTCTGCAGTAGTGTGTTCACAGATATCAACAGTTTGTCGGATCATATGAAAGTGCATACCTATCAATATTTCTGCGAGATTTGCAATAGGGGATTCGCACTCACAAGTGCATTGGATAGTCATCTTAAAACTCATGCGGCTGGTGACAGACCATACGTCTGTACAATTTGCTCAAGCGGTTTCAATCGGCCAGAACACTTGAAGGCACATGTAATGCGCCGGCATACAGGTGAAAAACCATATAAATGCACGGAGTGCGGGAGAGGATTCATACAGTCTGGGGAATTGAACATTCACATGAGGAGACATACTGGAGAACGACCGTATGTGTGTCAgATTTGCCATAGAGGTTTCATTCAGTCAAACGCTTTGACCTCTCACATGCGGACTCATACCGGCGAGAGGCCTTACATTTGCGCCGTGTGTCACAAAGGACATTGTACCTCTGGAGGTTTGTCTCAGCACATGAAAACTCATAGCAAATTATACTCTCCTTCTGCTGACCAGCTTACGCCACCTGCTAATGTTGTAAATCTATAA
Protein Sequence
MNIEQICRTCLLKGNDFVSLFCKDENGNKYYNEMIMSWTTLKISDKDGLPQMLCPQCVNQICATYKYLQKCERSDLLLREHYKCSSLDDSLIKVDDLKSSINEHNFKLEAGFGTDEAAHDSDEYESTERNDEECKSKTLPLNRSNTPKQNVYPCKKCDKYFLSWNDLNEHNLEHPKSDKISCRFCEKEFVHIRHIFPHIMRHHSAAIGFSCGYCDANFTNDVSLGAHIISHESNAIAPSKTNGGKDTEHLEDVDLNNSDSIKLEQQGHEDTSGVELRCTVCNILFMSQKEWKNHQSESHAEDQIICEVCLQLFESEELLNRHMNIHIKNGFNCPKCPKKFYYERNLKIHIRTHGSAKNSGTVDKSVSNKHKCSECGEMFKLRRFLQNHIKLKHGEHLNSENIQTDNNSRKDQVCDICNKSFRTSGDLRRHITTHDPDKPFHCQITRCKWSFASERDLAVHINVNHTDGKNECHFCQKVFKHPRNLRQHMITHKEDKRFTCKYCTKGFNHLHHLTNHERTHTGDTPYLCSECGKGFGTRDRLTFHMRLHTGVRPFVCSYCGKAFTIGASLKNHLRTHTGERPFMCSQCGKTFTAKFNLNKHMRVLHNVVDGAVIDGELQTHICSVCSSVFTDINSLSDHMKVHTYQYFCEICNRGFALTSALDSHLKTHAAGDRPYVCTICSSGFNRPEHLKAHVMRRHTGEKPYKCTECGRGFIQSGELNIHMRRHTGERPYVCQICHRGFIQSNALTSHMRTHTGERPYICAVCHKGHCTSGGLSQHMKTHSKLYSPSADQLTPPANVVNL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-