Basic Information

Insect: Panorpa germanica
Gene Symbol: -
Assembly: GCA_963678705.1
Location: OY783206.1:26979702-26981156[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.00029 0.018 16.5 1.2 1 23 12 34 12 34 0.95

2 17 1.6e-05 0.0011 20.4 1.5 3 23 42 62 40 62 0.95

3 17 2.6e-05 0.0017 19.7 2.2 1 23 68 90 68 90 0.96

4 17 3.9e-07 2.5e-05 25.5 4.7 1 23 96 118 96 118 0.98

5 17 1.4e-07 9.1e-06 26.9 1.4 1 23 124 146 124 146 0.98

6 17 7e-06 0.00045 21.5 1.0 1 23 152 174 152 174 0.97

7 17 0.00029 0.019 16.5 1.1 1 23 180 202 180 202 0.97

8 17 1.3e-05 0.00086 20.6 1.3 1 23 208 230 208 230 0.94

9 17 0.0027 0.17 13.4 1.8 1 23 236 258 236 258 0.96

10 17 2.5e-05 0.0016 19.8 3.9 1 23 264 286 264 286 0.96

11 17 7.8e-06 0.0005 21.4 1.4 1 23 292 314 292 314 0.98

12 17 7e-07 4.5e-05 24.7 1.1 1 23 320 342 320 342 0.98

13 17 4.6e-06 0.0003 22.1 0.7 1 23 348 370 348 370 0.97

14 17 0.019 1.2 10.7 1.3 1 23 376 398 376 398 0.92

15 17 1e-06 6.8e-05 24.1 1.6 1 23 404 426 404 426 0.98

16 17 3.3e-05 0.0021 19.4 2.3 1 23 432 454 432 454 0.97

17 17 6e-07 3.9e-05 24.9 2.5 1 23 460 482 460 482 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.00029	0.018	16.5	1.2	1	23	12	34	12	34	0.95
2	17	1.6e-05	0.0011	20.4	1.5	3	23	42	62	40	62	0.95
3	17	2.6e-05	0.0017	19.7	2.2	1	23	68	90	68	90	0.96
4	17	3.9e-07	2.5e-05	25.5	4.7	1	23	96	118	96	118	0.98
5	17	1.4e-07	9.1e-06	26.9	1.4	1	23	124	146	124	146	0.98
6	17	7e-06	0.00045	21.5	1.0	1	23	152	174	152	174	0.97
7	17	0.00029	0.019	16.5	1.1	1	23	180	202	180	202	0.97
8	17	1.3e-05	0.00086	20.6	1.3	1	23	208	230	208	230	0.94
9	17	0.0027	0.17	13.4	1.8	1	23	236	258	236	258	0.96
10	17	2.5e-05	0.0016	19.8	3.9	1	23	264	286	264	286	0.96
11	17	7.8e-06	0.0005	21.4	1.4	1	23	292	314	292	314	0.98
12	17	7e-07	4.5e-05	24.7	1.1	1	23	320	342	320	342	0.98
13	17	4.6e-06	0.0003	22.1	0.7	1	23	348	370	348	370	0.97
14	17	0.019	1.2	10.7	1.3	1	23	376	398	376	398	0.92
15	17	1e-06	6.8e-05	24.1	1.6	1	23	404	426	404	426	0.98
16	17	3.3e-05	0.0021	19.4	2.3	1	23	432	454	432	454	0.97
17	17	6e-07	3.9e-05	24.9	2.5	1	23	460	482	460	482	0.98

Sequence Information

Coding Sequence: ATGCAAAAACAATTACAGGCTACGGGAAAACCAtatttatgtgacatttgtaacaagtCTTTTGCTTACAAGAACAGTCTTGATACCCATAAACAACAACATATGAAGATAAAGACGATTGCATGTGACATTTGCAACAAGTCTTTCTCTCGAAAGTGCAGCCTTGTTCGACATAGAGTGATACATACGGGAGAAAAGCCATTTGCGTGTGAAATTTGCAATAAATCTTTTGCTCACAAGAGCAGCCTCGTTTACCATAAACAACAGCACACTGGGATAAAGCCGTACTCATGTGATATTTGCAACAAGTCATTTTCTGATAAGAGCAGCCTTAACAAACATAAATGTACGCACACTGGAGAAAAGCCGTTTTCCTGTAATATTTGCAACAAGTTTTTTATTCAAAAGAGCAGCCTTAATGTACATATACGTTCGCACACGGGAGAAAAGCCGTTTTCATGTAACATTTGCAACAAAGCTTTTATTCAAAAGGGCAGCCTTAAATCACATAAACTGAATCACACCGGAGAGAGTTTGTATTCTTGTAACATTTGCAACAAGTCATTTCTTCGTAAAGTTACTCTCCTGGTTCATAGACAACTGCATACGGGAATAAAGCCGTATGAATGTGACGTCTGCAAGAAGTCTTTCTTCCGAAAAAGTAGTCTTCTTCGACACAGTGTTATTCATAATGGAGAAAAGCCGTTTGTATGTGACGTTTGCGACAATCGTTTTGCTCACAAGAGTAGTCTCGATTATCACAAGTTACAGCACAGTAAAATGAAGCCTTATTTATGCGTCATTTGCAACAAGTCATTCTATGATAAGAGTAGCCTTAACAAACATAAACATACACACACGGGAGTAAAGCCGTATTCCTGTGACATTTGCAACAAATCTTTTATCCACAAAGGTAATCTTGGTATTCACAGAAAACTTCACACGGGGACAAAGCCATATTCTTGTGACATTTGCAACAAGTCTTTTATTCAAAAAGGTAGCCTTAATATGCATAAACGTATGCACACGGGTGAAAAACCATATTCTTGTGATATTTGCAACAAATCTTTTATTCAAAAGGGTAGCCTTAACATGCATAAAGTTACTCACTCGAGAGTAAGATCGTATTCTTGTAACGTATGCAACAAATCATTTGTTTGTAAGGTTAGTCTCGGAATTCATAGAGAAGAGCATTCTGGGATAAAGCCGTTTGAATGTGACATTTGCAATAAGTGTTTTGCTCGAAAGGGCAGTCTTCTTCGACATACACTTATACATACGGGAGAAAAACCGTTTGTATGTGACATTTGCAACAAGTCCTTTGCTCACAAGAGTAGTCTCGATTACCACAAACAACTGCACACGGGGGTAAAGCCCTATTCTTGTGACATGTGCAACAAGTCATTTTCTGATAGGAGTAGCCTTAACAAACATAAACTTAGACACACTGAATAA
Protein Sequence: MQKQLQATGKPYLCDICNKSFAYKNSLDTHKQQHMKIKTIACDICNKSFSRKCSLVRHRVIHTGEKPFACEICNKSFAHKSSLVYHKQQHTGIKPYSCDICNKSFSDKSSLNKHKCTHTGEKPFSCNICNKFFIQKSSLNVHIRSHTGEKPFSCNICNKAFIQKGSLKSHKLNHTGESLYSCNICNKSFLRKVTLLVHRQLHTGIKPYECDVCKKSFFRKSSLLRHSVIHNGEKPFVCDVCDNRFAHKSSLDYHKLQHSKMKPYLCVICNKSFYDKSSLNKHKHTHTGVKPYSCDICNKSFIHKGNLGIHRKLHTGTKPYSCDICNKSFIQKGSLNMHKRMHTGEKPYSCDICNKSFIQKGSLNMHKVTHSRVRSYSCNVCNKSFVCKVSLGIHREEHSGIKPFECDICNKCFARKGSLLRHTLIHTGEKPFVCDICNKSFAHKSSLDYHKQLHTGVKPYSCDMCNKSFSDRSSLNKHKLRHTE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -