Pger010250.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Panorpa germanica
Gene Symbol
-
Assembly
GCA_963678705.1
Location
OY783206.1:389524-392112[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 7.7e-08 5e-06 27.7 3.4 1 23 123 145 123 145 0.98
2 17 2.5e-06 0.00016 22.9 4.0 1 23 151 173 151 173 0.96
3 17 1.5e-07 1e-05 26.7 0.5 1 23 179 201 179 201 0.97
4 17 3.2e-06 0.00021 22.6 2.5 1 23 207 229 207 229 0.98
5 17 5.4e-08 3.5e-06 28.2 0.8 1 23 235 257 235 257 0.99
6 17 0.00014 0.0087 17.5 7.6 1 23 263 285 263 285 0.98
7 17 1.5e-05 0.00097 20.5 2.6 1 23 473 495 473 495 0.98
8 17 5.2e-06 0.00033 21.9 5.5 1 23 501 523 501 523 0.98
9 17 1.6e-06 0.0001 23.6 0.7 1 23 529 551 529 551 0.98
10 17 4.3e-07 2.8e-05 25.4 0.5 1 23 557 579 557 579 0.98
11 17 2.9e-07 1.9e-05 25.9 3.0 1 23 585 607 585 607 0.98
12 17 2.6e-08 1.7e-06 29.2 2.3 1 23 613 635 613 635 0.99
13 17 1.8e-07 1.1e-05 26.6 2.7 1 23 641 663 641 663 0.99
14 17 9.4e-07 6.1e-05 24.3 1.3 1 23 669 691 669 691 0.99
15 17 0.00011 0.0073 17.7 1.9 5 23 712 730 709 730 0.95
16 17 6.6e-07 4.2e-05 24.8 3.0 1 23 736 758 736 758 0.98
17 17 3.2e-05 0.0021 19.4 4.7 1 23 764 786 764 786 0.98

Sequence Information

Coding Sequence
ATGGAAAATGAAAATCATACTTTGCTAAATTTGGAAATGGGAAAAGAAACATCTACTATTCATTTGTTGAAAAATGACATCTCACCTTTTACATTCTCTAATGCAGaatacaatacaatagataACAGTTCTCAAAATGTTCCAGCAGATACCGAAACATTTATTGTAGAAAACAGAAGCTCTTTGTCGTCTTCGAAGTTGGATAATAACTCTGAATGGCTTGCAGCAACTGGATCTGCTCTGGTTAGTTTAACTCCAAATAGCTATTTAAAAGCTGATTTGActctattaaataataaacaatattttcaacCTCCTTCACACAGTGTACAAGTCAATTATCAAAATGATGAAATTTTAAAACCTTACAGTTGTTCTGATTGTGGCAAATCTTTCAGAAGATCTGATCATTTGAAGGTTCACCAGACCACGCATTCAGATGTACGACCTCATAACTGCGGGACCTGCGGAAAATCTTTTACTCGCTTAGAACATTTAAAGAAGCATATTCAAGTGCATTCAGGTATTAAACCTTTTAAGTGTAACGACTGCGGAAAATCTTTTGGTCgttcagaaaatttgaaaaatcattTGGTGGTACATTCAGGCATCCGTCCATTTGTATGCCAGACATGTGGTAAAAGTTTTGGCAGAACCGAGCATTTGAAGAACCATCTTATGACTCACTCTGGTGTCAAACCTTTTAAATGCACTGAATGTGGAAAGGAATTTGGGAGAAGTGATAACTTACAACGTCATCTGCTGACGCATTCAGGAGTTCGACCGCATAAATGCCAAACTTGTGGAAAAACGTACTGCcgaattgaacatttgaaaaaACACATCATAACTCATTCCATTCTTAGCACCAATAACTCAGAGGAAGGTCTCTATAACTGCATGGTCAGCATATCCCCAGATATAGAAATTCAAGTAGGGGATGAAGCACAAACCAAAAAGTTCAATGCTCAGATCTACACCAATCTTACACCGCCACCGttagaattaataaatttagttaaagataataaaatggATGGTCTTCTAATTAATACGGATGATGAGTCACACTCACAGTGCAGCAATTATAACAACAAGCAGCTACTCAAAACAGGGTACACATCATTGCCAGATATGCTCAGCAATAGCTCCAAGTCTAGTTCAGATAATTTTAGGAACTACGGTGCAAGTAACATTGAAGTTAAAGTAGAAATGATCAATGATGAGAGTTCTGCAGATGTTAGTTTAATAGAACCATTTTTAAATAGCGCTTACGTTAAagaagagattaaattagatgaaATTAGTGATGGTGTTGAATTACATCGTCAGCTGgaactttataaaaatagtattaTAGGAGAACATGTAAATCTCAACAGTTTAAATGTTCAAGCTGCGTCTGCGTCTAGACCATATTCGTGCAGCCAATGCGGTAAAAGATACATTAGACTGGAACATCTGAGAAGACATGAATTGACACATTCTGCTATAAAACCTCATAAATGTGAGGACTGCGGGAGATGTTTTGGGAGATTAGAACATTTAAGGAATCACATGATCACCCATACAGGAATTAAGGCATTTAAATGCGAAGAATGTGGAAAGGAATTTGGAagattagaaaatttaaaaaggcaTGAAACCACTCATTCTGATTTGACTCCTTTTCCTTGTCCAATGTGTGGGAAAGCATTTGCTAGAACGGAACATCTTAAGAATCATTTGATAACTCATTCTGGAATTCGTCCTTTTAAATGTGAAGAATGTGGGAAAACCTTTGCGAGAAATGAACATTTGAAAAACCACTTGTTCACCCACACTGGAATAAAACCATTCAAGTGCGAAGATTGTGGAAAATCTTTTGCAAGAAATGAACATTTAAAGAATCATTTGATGACTCATTCTGGTATTAAGCCGTACAGATGTGAAGATTGTGGGAAAAATTTTGGCAGATCTGAACATTTAAAAAGACATCAACTGACTCACTCAGACATAAAACCTTATACTTGTGATTATTGCGGAAAAGAATTTGGAAGActggaaaatttaaagaaacataaattaaCACATGAAAAAACGATTTATAATGGTAGCGGTTATGCTCAGCCTGCAGAGAAGGAATATAAATGTGAATGCGGTAAAGAATTTGCTAGAAAAGAACATTTGAAGAATCACCAAATCACCCATTCCGGCGTGAAACCATTTAAATGTGACGATTGTGGGAAAAGTTTTGGAAGAAGTGAACATTTGAAGAGACACAAAGTGACTCATAGTGAAGTTAGGCCCCATAAGTGTAATGAATGCGGAAAAGAATTTGGAAGAATTGATCATCTGAAGAAACATCAAACCAGGCATTCTAATAATGTGTCTGAAATAAGTCAGCAGTATTGTaatgactttaaacaattagAAAGTTTTCAACAATATAGTGGAGTATTGCCAATTGTTGAACAGTATGGCACTGAGCTAGGACGTCTATATAATATTCAGCAACAACTGTTGAATTCGGAAGCACCTTTTAAATGCGAAATTATTAGTAATGCTGTAAAAGATTTGGATCAGTTGACTGTTTGGAAAAGTACTTGA
Protein Sequence
MENENHTLLNLEMGKETSTIHLLKNDISPFTFSNAEYNTIDNSSQNVPADTETFIVENRSSLSSSKLDNNSEWLAATGSALVSLTPNSYLKADLTLLNNKQYFQPPSHSVQVNYQNDEILKPYSCSDCGKSFRRSDHLKVHQTTHSDVRPHNCGTCGKSFTRLEHLKKHIQVHSGIKPFKCNDCGKSFGRSENLKNHLVVHSGIRPFVCQTCGKSFGRTEHLKNHLMTHSGVKPFKCTECGKEFGRSDNLQRHLLTHSGVRPHKCQTCGKTYCRIEHLKKHIITHSILSTNNSEEGLYNCMVSISPDIEIQVGDEAQTKKFNAQIYTNLTPPPLELINLVKDNKMDGLLINTDDESHSQCSNYNNKQLLKTGYTSLPDMLSNSSKSSSDNFRNYGASNIEVKVEMINDESSADVSLIEPFLNSAYVKEEIKLDEISDGVELHRQLELYKNSIIGEHVNLNSLNVQAASASRPYSCSQCGKRYIRLEHLRRHELTHSAIKPHKCEDCGRCFGRLEHLRNHMITHTGIKAFKCEECGKEFGRLENLKRHETTHSDLTPFPCPMCGKAFARTEHLKNHLITHSGIRPFKCEECGKTFARNEHLKNHLFTHTGIKPFKCEDCGKSFARNEHLKNHLMTHSGIKPYRCEDCGKNFGRSEHLKRHQLTHSDIKPYTCDYCGKEFGRLENLKKHKLTHEKTIYNGSGYAQPAEKEYKCECGKEFARKEHLKNHQITHSGVKPFKCDDCGKSFGRSEHLKRHKVTHSEVRPHKCNECGKEFGRIDHLKKHQTRHSNNVSEISQQYCNDFKQLESFQQYSGVLPIVEQYGTELGRLYNIQQQLLNSEAPFKCEIISNAVKDLDQLTVWKST

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-