Pger012205.1
Basic Information
- Insect
- Panorpa germanica
- Gene Symbol
- -
- Assembly
- GCA_963678705.1
- Location
- OY783206.1:26969517-26972745[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.00011 0.0069 17.8 4.3 1 23 254 276 254 276 0.99 2 21 2.7e-06 0.00017 22.9 2.5 1 23 282 304 282 304 0.98 3 21 2e-06 0.00013 23.2 0.8 1 23 310 332 310 332 0.98 4 21 6.1e-05 0.004 18.6 2.8 1 23 338 360 338 360 0.98 5 21 2.7e-06 0.00017 22.9 2.5 1 23 366 388 366 388 0.98 6 21 6.1e-05 0.004 18.6 2.8 1 23 394 416 394 416 0.98 7 21 2.2e-06 0.00014 23.1 0.8 1 23 422 444 422 444 0.98 8 21 5.1e-06 0.00033 22.0 3.0 1 23 450 472 450 472 0.98 9 21 6.1e-05 0.004 18.6 2.8 1 23 478 500 478 500 0.98 10 21 2.2e-06 0.00014 23.1 0.8 1 23 506 528 506 528 0.98 11 21 5.1e-06 0.00033 22.0 3.0 1 23 534 556 534 556 0.98 12 21 6.1e-05 0.004 18.6 2.8 1 23 562 584 562 584 0.98 13 21 2.7e-06 0.00017 22.9 2.5 1 23 590 612 590 612 0.98 14 21 2.7e-06 0.00017 22.9 2.5 1 23 618 640 618 640 0.98 15 21 2.6e-06 0.00017 22.9 0.6 1 23 646 668 646 668 0.98 16 21 4.7e-05 0.003 18.9 2.7 1 23 674 696 674 696 0.98 17 21 0.00056 0.036 15.5 2.3 1 23 702 724 702 724 0.98 18 21 2.6e-06 0.00017 22.9 0.6 1 23 730 752 730 752 0.98 19 21 6e-05 0.0039 18.6 2.3 1 23 758 780 758 780 0.98 20 21 1.1e-06 7.2e-05 24.0 1.0 1 23 786 808 786 808 0.98 21 21 8.1e-07 5.2e-05 24.5 1.1 1 23 814 836 814 836 0.98
Sequence Information
- Coding Sequence
- ATGGAACAGGAGCAGTTGATGagtatgaatataaaaatagaaacagaCATTGAGGAACGTCCTCTGAAAGAACAGTTATCACCCGTTGATAGTATCCAAAAAGAATACGCCGAAAATTCAGATGAAGCATCAGACTGGTCACGTgataacattaaatatgaaaCCGACGTTAATTCATGTGAAAATTGTGGCGATCTTTTCCTCAACTTCAACAAAATGATGGAACACCAAGAGATGTCAACAAGTTGCAAAAGAAATATTCTACAGGATTCGACGAATAAGCAGGGAATTGAtcaatcaaatcaagtcaatgACTTATCAAGCAAACCACTAGACAATTCAACTGAAAGTGCAAAACATTTAAAGACAAATTCAGTAGCTGAAAAGGAAAACACGGATGTCAAGATGGCTGCTGTATGTGATATATCCCTGAACGATAAAAATgactttaaaatagaaatagaagagaaCAGTGTTGTTCACATTAATAAAATGCATATTAAATTAGAATGCAAAGAGGAAGTCGATGATGATACAGCTCTAGAAGATCCACAAAGTCAATCGcataattactttataaaacTCGAGGTGGAAAGGTCCCCGACAAGTGTGGAGTCTTTGGAGGAACATTTGAAAGTAAACCCAGATTGCAAACAATTTAATAATGCATACCAGAGTGTTGATGTAGAAGGGGCTATAGAACGTATCACTCCAAATAACTGTAGCCTTCACATGCAAATGAATACTGTAATAAAGCCGTATTCATGTGATATTTGCAACAAACGTTTTATTAAACTGTGTAACCTTAATATGCATAAACGTACTCACACGGGAGAAAAGCCgtattcatgtgacatttgcaacAAGTCTTTTGCTCACAAACAAGACCTTACTATCCATAAACGTATGCACACGGGAGAAAAGCCTTATTCATGTAACATTTGCAACAAGTCTTTTGCTCAAAAACAAGGCCTTACTATTCATAAACGTATACACACGGGAGAAAAACCatattcatgtgacatttgcaacAAGTCTTTTGCTCACAAACAAGTCCTTACTATGCATAAACGTATGCACACGGGAGAAAAGCCttattcatgtgacatttgcaacAAGTCTTTTGCTCACAAACAAGACCTTACTATCCATAAACGTATGCACACGGGAGAAAAACCgtattcatgtgacatttgcaacAAGTCTTTTGCTCACAAACAAGTCCTTACTATGCATAAACGTATGCACACGGGAGAAAAGCCgtattcatgtgacatttgcaacAAGTCTTTTGCTCAAAAACAAGGCCTTACTATCCATAAACGTATGCACACGGGAGAAAAGCCgtattcatgtgacatttgcaacAAGTCTTTTGCTCACAAACAAGACCTTACTATGCATAAACGTATGCACACGGGAGAAAAACCgtattcatgtgacatttgcaacAAGTCTTTTGCTCACAAACAAGTCCTTACTATGCATAAACGTATGCACACGGGAGAAAAGCCgtattcatgtgacatttgcaacAAGTCTTTTGCTCAAAAACAAGGCCTTACTATCCATAAACGTATGCACACGGGAGAAAAGCCgtattcatgtgacatttgcaacAAGTCTTTTGCTCACAAACAAGACCTTACTATGCATAAACGTATGCACACGGGAGAAAAACCgtattcatgtgacatttgcaacAAGTCTTTTGCTCACAAACAAGTCCTTACTATGCATAAACGTATGCACACGGGAGAAAAACCgtattcatgtgacatttgcaacAAGTCTTTTGCTCACAAACAAGACCTTACTATCCATAAACGTATGCACACGGGAGAAAAACCgtattcatgtgacatttgcaacAAGTCTTTTGCTCACAAACAAGACCTTACTATCCATAAACGTATGCACACGGGAGAAAAGCCgtattcatgtgacatttgcaacAAGTCTTTTGCTCAAAAACAAGGCCTTACTATTCATAAACGTATACACACGGGAGAAAAACCatattcatgtgacatttgcaacAAGTCTTTTGCTCACAAAAAAGTCCTTACTATGCATAAACGTATACACACGGGAGAAAAGCCgtattcatgtgacatttgcaacAAGTCTTTTGCTCACAAACAAATCCTTACTATGCATAAACGTATACACACGGGAGAAAAGCCgtattcatgtgacatttgcaacAAGTCTTTTGCTCAAAAACAAGGCCTTACTATTCATAAACGTATACACACGGGAGAAAAACCatattcatgtgacatttgcaacAAGTCTTTTGCTCACAAACAAGTCCTTACTATGCATAAACGTATACACACGGGAGAAAAGCCgtattcatgtgacatttgcaaaAAGTCGTTTATTCAAAAAGACAGCCTTAATATCCATAAACGTATACACACAGGAGAAAAACCatattcatgtgacatttgcaacAAGTCTTTTGCTCAAAAACAAGGCCTTACTAGGCATAAACGTATACACACGGGGGAAAAGCCTTATTCATGTGATATTTGA
- Protein Sequence
- MEQEQLMSMNIKIETDIEERPLKEQLSPVDSIQKEYAENSDEASDWSRDNIKYETDVNSCENCGDLFLNFNKMMEHQEMSTSCKRNILQDSTNKQGIDQSNQVNDLSSKPLDNSTESAKHLKTNSVAEKENTDVKMAAVCDISLNDKNDFKIEIEENSVVHINKMHIKLECKEEVDDDTALEDPQSQSHNYFIKLEVERSPTSVESLEEHLKVNPDCKQFNNAYQSVDVEGAIERITPNNCSLHMQMNTVIKPYSCDICNKRFIKLCNLNMHKRTHTGEKPYSCDICNKSFAHKQDLTIHKRMHTGEKPYSCNICNKSFAQKQGLTIHKRIHTGEKPYSCDICNKSFAHKQVLTMHKRMHTGEKPYSCDICNKSFAHKQDLTIHKRMHTGEKPYSCDICNKSFAHKQVLTMHKRMHTGEKPYSCDICNKSFAQKQGLTIHKRMHTGEKPYSCDICNKSFAHKQDLTMHKRMHTGEKPYSCDICNKSFAHKQVLTMHKRMHTGEKPYSCDICNKSFAQKQGLTIHKRMHTGEKPYSCDICNKSFAHKQDLTMHKRMHTGEKPYSCDICNKSFAHKQVLTMHKRMHTGEKPYSCDICNKSFAHKQDLTIHKRMHTGEKPYSCDICNKSFAHKQDLTIHKRMHTGEKPYSCDICNKSFAQKQGLTIHKRIHTGEKPYSCDICNKSFAHKKVLTMHKRIHTGEKPYSCDICNKSFAHKQILTMHKRIHTGEKPYSCDICNKSFAQKQGLTIHKRIHTGEKPYSCDICNKSFAHKQVLTMHKRIHTGEKPYSCDICKKSFIQKDSLNIHKRIHTGEKPYSCDICNKSFAQKQGLTRHKRIHTGEKPYSCDI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -