Pger026441.1
Basic Information
- Insect
- Panorpa germanica
- Gene Symbol
- -
- Assembly
- GCA_963678705.1
- Location
- OY783215.1:192104-225022[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 33 0.034 2.2 9.9 3.2 1 23 73 95 73 95 0.98 2 33 0.0056 0.36 12.4 0.2 2 23 98 119 97 119 0.97 3 33 0.0014 0.091 14.3 1.2 3 23 132 152 131 152 0.97 4 33 0.00015 0.0096 17.4 1.4 3 23 159 179 157 179 0.96 5 33 0.0069 0.45 12.1 1.5 1 23 185 208 185 208 0.97 6 33 0.00028 0.018 16.5 2.7 1 23 214 236 214 236 0.98 7 33 0.00037 0.024 16.1 2.5 1 23 242 264 242 264 0.97 8 33 8e-06 0.00051 21.4 0.4 2 23 271 292 270 292 0.96 9 33 0.00046 0.03 15.8 4.1 1 23 298 320 298 320 0.97 10 33 0.044 2.9 9.6 0.2 2 23 499 520 498 520 0.96 11 33 0.0014 0.091 14.3 1.2 3 23 533 553 532 553 0.97 12 33 0.00015 0.0096 17.4 1.4 3 23 560 580 558 580 0.96 13 33 0.0069 0.45 12.1 1.5 1 23 586 609 586 609 0.97 14 33 0.00028 0.018 16.5 2.7 1 23 615 637 615 637 0.98 15 33 0.00037 0.024 16.1 2.5 1 23 643 665 643 665 0.97 16 33 8e-06 0.00051 21.4 0.4 2 23 672 693 671 693 0.96 17 33 0.00046 0.03 15.8 4.1 1 23 699 721 699 721 0.97 18 33 0.029 1.9 10.2 0.2 2 23 888 909 887 909 0.97 19 33 0.0014 0.091 14.3 1.2 3 23 922 942 921 942 0.97 20 33 0.00015 0.0096 17.4 1.4 3 23 949 969 947 969 0.96 21 33 0.031 2 10.0 2.5 1 23 975 998 975 998 0.97 22 33 0.00028 0.018 16.5 2.7 1 23 1004 1026 1004 1026 0.98 23 33 0.00037 0.024 16.1 2.5 1 23 1032 1054 1032 1054 0.97 24 33 8e-06 0.00051 21.4 0.4 2 23 1061 1082 1060 1082 0.96 25 33 0.00046 0.03 15.8 4.1 1 23 1088 1110 1088 1110 0.97 26 33 0.0045 0.29 12.7 2.8 1 23 1331 1353 1331 1353 0.98 27 33 0.00087 0.056 14.9 1.4 2 23 1387 1408 1387 1408 0.96 28 33 2.1e-05 0.0013 20.0 0.8 1 23 1413 1435 1413 1435 0.96 29 33 0.0014 0.09 14.3 3.5 1 23 1441 1464 1441 1464 0.98 30 33 0.0027 0.17 13.4 2.7 1 23 1470 1492 1470 1492 0.98 31 33 0.0028 0.18 13.3 0.4 1 23 1498 1520 1498 1520 0.97 32 33 1.4e-05 0.00088 20.6 1.7 3 23 1528 1548 1527 1548 0.98 33 33 9.2e-05 0.0059 18.0 2.0 1 23 1554 1576 1554 1576 0.97
Sequence Information
- Coding Sequence
- ATGCTTACAAAACTGCTCCACATGAAAGAAGacataaataatattgtaaaaattgAGGCTAAAGATTATGATACAGATGAAGTCATTGATGAGCCTAAAAATATAGTGATCACAGATTTTCTGAAAGTGGATTACACTTCAACATCAGATAACAATAAAACGAAGAAGAAAATGCAAAATGtagattcaaaaattaataatactttgATAAATACTCATACTTGCTTAATATGCCGATCATCATACAGTAGTAATGTAAAACTAGCAAGGCATAAAAAAACGCATTCTACCACATGCTGGGATtgttacattaattttaatacagcAGAAGAATATAAAGAGCATATAAAGATACATGTAAAGAAGCCAGAAAAGAAACATGAGGAAGCTGCATGTGCAGAATGtggtaaagtttttaaaaataaaaagcaatGTAATGCTCATCAATTAGTTCATTCTAAAGACAAACATTTATGTACAATATGTGGAAAGGAACTTTGTTCATCTTCTGCATTAAATGCACATATCAAAATACATACTGGAGAGAAAAATTATGAATGTGAATACTGCGGCAGAAAGTTTTTGCATTGGAGTGCACGAAGATACCATGTTAGAAGTGCTCATACTCTGGAGAAGCTGTATGCATGTGATTTTTGTGACAAACGGTACACTGATAAGAATTGTTTGATAAACCATGTTCGAAGTCACACAGGCGAGAAACCTTTCAACTGTACTCTGTGTGATATGAAATTTTCACGAAAATCAGTTTTAACGATGCATATGTTTAAGCACACTGGTGAAAAGCGAATATATTGTCAAGTTTGTGGCAAAGGATTCACAAAAAGTTCAGGTTTGAAAACGCACATGGTTACGCACACCGGGGAAAGGAATCACGTCTGCATGGTCTGTGGTAAGGCATTTACGCAAGCACATGTTCTGAGAAGTCATATGAAGCACCATCCGGAGAAACCATTCCTCTCCGCAGTTAAAGTTAACAAAGACTTGCATAAAGCTGGTGCAAGAAGTTGTATGCATATAGAGTTCGATATTGGAGGCTCTAAGATGCGGTATGATGCTGGCGATCCAGTTAATGTCCAAGATCTTGTCAATAAACTAGGTAAGATTACTGGCATTAATACAGTATTGATACGGTGTTTATTAATAAGGAGCACCTCCTCTTTGTCCTACAACTTATCGAGCGGCTTTGATCGATCCACTCACTTATGGAAATCAATTTTGAAAGAATTATCGGAGTATTGTTCTGATGAAAAGAAACCATTCCTCTCCGCAGTTAAAGTTAACAAAGACTTGCATAAAGCTGGTGCAAGAAGTTGTATGCATATAGAGTTCGATATTGGAGGCTCTAAGATGCGGTATGATGCTGGCGATCCAGTTAATGTCCAAGATCTTGTCAATAAACTAGGATTCAACGCTATAGAAAATTCTAAGACGAGTAATGTAAAACTAGCAAGGCATAAAAAAACACATTCTACCATGTGCTGGGATTGTTACATTAATTTCAATACCGTAGAAGAATATAAAGAGCATATAAAGATACATGTAAAGAAGCCAGAGAAGAAGCATGAGGAAGCTGCATGTGCAGAATGtggtaaagtttttaaaaataaaaagcaatGTAATGCTCATCAATTAGTTCATTCTAAAGACAAACATTTATGTACAATATGTGGAAAGGAACTTTGTTCATCTTCTGCATTAAATGCACATATCAAAATACATACTGGAGAGAAAAATTATGAATGTGAATACTGCGGCAGAAAGTTTTTGCATTGGAGTGCACGAAGATACCATGTTAGAAGTGCTCATACTCTGGAGAAGCTGTATGCATGTGATTTTTGTGACAAACGGTACACTGATAAGAATTGTTTGATAAACCATGTTCGAAGTCACACAGGCGAGAAACCTTTCAACTGTACTCTGTGTGATATGAAATTTTCACGAAAATCAGTTTTAACGATGCATATGTTTAAGCACACTGGTGAAAAGCGAATATATTGTCAAGTTTGTGGCAAAGGATTCACAAAAAGTTCAGGTTTGAAAACGCACATGGTTACGCACACCGGAGAAAGGAATCACGTCTGCATGGTCTGTGGTAAGGCATTTACGCAAGCACATGTTCTGAGAAGTCATATGAAGCACCATCCGGAGAAACCATTCCTCTCCGCAGTTAAAGTTAACAAAGACTTGCATAAAGCTGGTGCAAGAAGTTGTATGCATATAGAGTTCGATATTGAAGGCTCTAAGATGCGGTATGATGCTGGCGATCCAGTTAATGTCCAAGATCTTGTCAATAAACTAGGTAAGATTACTGGCATTAATACAGTATTGATACGGTGTTTATTAATAAGGAGCACCTCCTCTTTGTCCTACAACTTATCGAACGGCTTTGATCGATCCACTCACTTATGGAAATCAATTTTGAAGGAATTATCGGAGTATTGTTCTGATGAAAAGTTTTGGTCCAATACGAAACTTCAACAGGGCGATATTAATAAGAGACTTGCCACCACTTGGCTATCAAGAAAAAAATGCACAAATGCACAACTGGTACTTATTTTCATTAGGGAAAGATTCAACGCTATAGAAAATTCTAAGACGAGTAATGTAAAACTAGCAAGGCATAAAAAAACACATTCTACCACGTGCTGGGATTGTTACATTAATTTCAATACCGTAGAAGAATATAAAGAGCATATAAAGATACATGTAAAGAAGCCAGAGAAGAAGCATGAGGAAGCTGCATGTGCAGAATGtggtaaagtttttaaaaataaaaagcaatGTAATGCTCATCAATTAGTTCATTCTAAAGACAAACATTTATGTACAATATGTGGAAAGGAACTTTGTTCATCTTCTGCATTAAATGCACATATCAAAATACATACTGGAGAGAAAAATTATGAATGTGAATACTGCGGCAGAAAGTTTTTGCATTGGAGTGCACGAAGATACCATTTTAGAAGTGCTCATACTCTGGAGAAGCTGTATGCATGTGATTTTTGTGACAAACGGTACACTGATAAGAATTGTTTGATAAACCATGTTCGAAGTCACACAGGCGAGAAACCTTTCAACTGTACTCTGTGTGATATGAAATTTTCACGAAAATCAGTTTTAACGATGCATATGTTTAAGCACACTGGTGAAAAGCGAATATATTGTCAAGTTTGTGGCAAAGGATTCACAAAAAGTTCAGGTTTGAAAACGCACATGGTTACGCACACCGGGGAAAGGAATCACGTCTGCATGGTCTGTGGTAAGGCATTTACGCAAGCACATGTTCTGAGAAGTCATATGAAGCACCATCCGGAGAAACCATTCCTCTCCGCAGTTAAAGTTAACAAAGACTTGCATGAAGCTGGTGCAAGAAGTTGTATGCATATAGAGTTCGATATTGGAGGCTCTAAGATGCGGTATGATGCTGGCGATCCAGTTAATGTCCAAGATCTTGTCAATAAACTAGCGTCGATTATTTCGACAGCTCCAGACGCAACTCCATGCATTTCTTGCTTAAGACACCAGAGGTTCAAACTCCTCGGAGATGGACATCTTCAAAGTTATTTTGTGTTGACAAATTTGATTTCTGTTACTTTCTTGTTGTCTGATAGAGTTAAGTATTCATCAAAGGATGGTTTCCCGCAATTGATTTGTTCATTGTGTATTACTCATATGTACAACGCACTAGAATTCAGAACAAAATGTAAATCTTCTGAAAATATGCTTACAAAACTGCTTCATATGAGAGAAGatataaataacattataaaaattgaGACAAAAGATTCTGATACAGATGAAACCAATGATGAACCCAAAAATATAGTAATCACAGATTTTCTTAAAGTAGATTACACTTCAACATCAGATAAGAATAAAACAGAAACTTTAAATGACAAATTAAATCCCGTATTTTTCAAGAAAAGCGAAAATGTGGATTCGAAAAATAATGCTACTTTGATAAATACTCATACTTGCTCAATATGTAAATCATCATATAGTAGTTATATAGAACTAGCAAGACATAGAAAAACACATTCCAAAACATACTGGAAGGAAAAATTAAATACTACAAGAAAGTTAAATGACGAATTACAAAAGAATGTAACAAAACCTGTAGAAGAAAGTTCTGAAAATGTTTGTTTAGAATGTGGAaaagttttcaaaaataaatatcaatgtaAAGCTCATCAAATAATTCATGCAAAAGACAAATATTTATGCACAATTTGCGGGAAGAAAGTTTGTACAGCGTCTTCCTTAAAGGCTCATGTCAGGATACACACCGGGGAGAAAAGATACGAATGTAATTATTGTGGCAAGAAATTTTTGCATTGGAGTGAACGTAAATATCACATCAGAAGTACTCACACTTTGGAGAAGCCGTACGCTTGTCATCTTTGTGAGAATCGTTACACGGCTAGAGGACATTTAGTGAGGCACATACGGACCCACACAGGAGAAAAACCTTTTGCATGCACCATGTGTGATATGAAGTTTATCGGGAACATAGATTTGAAAATGCATATGTACAAACACACAGGAGAGAAAAGAGTGTTTTGTACGATTTGTAATAAGGGTTTTACaaagaattataatttaaagtctCACATGGTAACGCATACTGGAGAAAGAAATCATGTCTGCTCCATTTGTGGAAAAGGATTTACTCAAGCTCATGTGCTACGAACTCATTTGAAACTACATCCGGAAGCCACAAAAGCACCAGAGGCTAATGATCCAACGAAACCAACTttgtaa
- Protein Sequence
- MLTKLLHMKEDINNIVKIEAKDYDTDEVIDEPKNIVITDFLKVDYTSTSDNNKTKKKMQNVDSKINNTLINTHTCLICRSSYSSNVKLARHKKTHSTTCWDCYINFNTAEEYKEHIKIHVKKPEKKHEEAACAECGKVFKNKKQCNAHQLVHSKDKHLCTICGKELCSSSALNAHIKIHTGEKNYECEYCGRKFLHWSARRYHVRSAHTLEKLYACDFCDKRYTDKNCLINHVRSHTGEKPFNCTLCDMKFSRKSVLTMHMFKHTGEKRIYCQVCGKGFTKSSGLKTHMVTHTGERNHVCMVCGKAFTQAHVLRSHMKHHPEKPFLSAVKVNKDLHKAGARSCMHIEFDIGGSKMRYDAGDPVNVQDLVNKLGKITGINTVLIRCLLIRSTSSLSYNLSSGFDRSTHLWKSILKELSEYCSDEKKPFLSAVKVNKDLHKAGARSCMHIEFDIGGSKMRYDAGDPVNVQDLVNKLGFNAIENSKTSNVKLARHKKTHSTMCWDCYINFNTVEEYKEHIKIHVKKPEKKHEEAACAECGKVFKNKKQCNAHQLVHSKDKHLCTICGKELCSSSALNAHIKIHTGEKNYECEYCGRKFLHWSARRYHVRSAHTLEKLYACDFCDKRYTDKNCLINHVRSHTGEKPFNCTLCDMKFSRKSVLTMHMFKHTGEKRIYCQVCGKGFTKSSGLKTHMVTHTGERNHVCMVCGKAFTQAHVLRSHMKHHPEKPFLSAVKVNKDLHKAGARSCMHIEFDIEGSKMRYDAGDPVNVQDLVNKLGKITGINTVLIRCLLIRSTSSLSYNLSNGFDRSTHLWKSILKELSEYCSDEKFWSNTKLQQGDINKRLATTWLSRKKCTNAQLVLIFIRERFNAIENSKTSNVKLARHKKTHSTTCWDCYINFNTVEEYKEHIKIHVKKPEKKHEEAACAECGKVFKNKKQCNAHQLVHSKDKHLCTICGKELCSSSALNAHIKIHTGEKNYECEYCGRKFLHWSARRYHFRSAHTLEKLYACDFCDKRYTDKNCLINHVRSHTGEKPFNCTLCDMKFSRKSVLTMHMFKHTGEKRIYCQVCGKGFTKSSGLKTHMVTHTGERNHVCMVCGKAFTQAHVLRSHMKHHPEKPFLSAVKVNKDLHEAGARSCMHIEFDIGGSKMRYDAGDPVNVQDLVNKLASIISTAPDATPCISCLRHQRFKLLGDGHLQSYFVLTNLISVTFLLSDRVKYSSKDGFPQLICSLCITHMYNALEFRTKCKSSENMLTKLLHMREDINNIIKIETKDSDTDETNDEPKNIVITDFLKVDYTSTSDKNKTETLNDKLNPVFFKKSENVDSKNNATLINTHTCSICKSSYSSYIELARHRKTHSKTYWKEKLNTTRKLNDELQKNVTKPVEESSENVCLECGKVFKNKYQCKAHQIIHAKDKYLCTICGKKVCTASSLKAHVRIHTGEKRYECNYCGKKFLHWSERKYHIRSTHTLEKPYACHLCENRYTARGHLVRHIRTHTGEKPFACTMCDMKFIGNIDLKMHMYKHTGEKRVFCTICNKGFTKNYNLKSHMVTHTGERNHVCSICGKGFTQAHVLRTHLKLHPEATKAPEANDPTKPTL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -