Pger011998.1
Basic Information
- Insect
- Panorpa germanica
- Gene Symbol
- -
- Assembly
- GCA_963678705.1
- Location
- OY783206.1:25397899-25398318[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.3e-08 0.00022 21.9 0.0 7 35 18 46 15 52 0.91 2 2 4.9 1.7e+04 -3.3 0.0 37 44 111 118 110 118 0.81
Sequence Information
- Coding Sequence
- ATGTTGCAACCCGTCCTTAATAATTCTAAAGGGAAGAGAAAACATGTTGAGCATGCCGTGGTTGCTGTTCTGAACAAGGAATTAGGACAAAAAAAGGCAGCACAGCAGTTTGGTGTCTCACTGGTCACTTTAAAGCGTAATCTTGCCTCCCAATCATTCACCGTTGAGGAAGAAGCTTTCTTGGCAGAACAGTTCAAGAACCAACCTGGTCTTACATGTCGATTAATGAGAGAACAGGCGTATCAGTATGCCTCACAATTACCACATTGTAAATATCCTGAGGGATGGGATAGAAGGAAGGTAGCAGGACATACTTGGTTCAATGGATTCGTAAGACGACACCCAGAACTGAAAGTGGGACGACGTGGGAAACCTATTCGAAACCAACGAAAAAGGAAAGGAAATAGGAAACTGTTTTGA
- Protein Sequence
- MLQPVLNNSKGKRKHVEHAVVAVLNKELGQKKAAQQFGVSLVTLKRNLASQSFTVEEEAFLAEQFKNQPGLTCRLMREQAYQYASQLPHCKYPEGWDRRKVAGHTWFNGFVRRHPELKVGRRGKPIRNQRKRKGNRKLF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -