Pger030029.1
Basic Information
- Insect
- Panorpa germanica
- Gene Symbol
- ttk
- Assembly
- GCA_963678705.1
- Location
- OY783218.1:3901508-3904724[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.2e-16 4.2e-13 49.8 0.0 2 42 398 439 397 442 0.95 2 2 2.4 8.4e+03 -2.4 0.0 25 32 532 539 531 540 0.86
Sequence Information
- Coding Sequence
- ATGTCTGTACAACAATTTTGTTTGCGGTGGAACAACCATCAACccaattttatttctgtattttcAAATCTACTACTTAATGAATCACTAGTAGATGTTACATTAGCTGCAGAAGGAAGACATCTTCAGGCACATAAAGTTGTTCTTTCTGCATGCAGCTCATACTTCCAGTCGCTCTTCACTATAAATCCATGCCAACAtccaattgttattttaaaagatgTAAAATACAACGATTTAAAGACGATGGTAGACTTCATGTACTACGGAGAAGTAAATGTATCACAAGAACAATTACCGCATATATTAAAGACCGcagaaatgttaaaaataaaaggtttaGCAGAAATGCCAGATTCAACATCACTCACAAAATCTCAGAGTACATCGTCAGATCGGGCAGAAATATTAACTCCAGGAGACTCAACTTGGGGATCAGATCCACATCGACACACACCATCACCTTCACCAATGTCTCCTAACTCCAGaagaaaaaggcTGCGAAAATCATCTACAGGATCCGGATCATTGTCAACAGAACGAAATTCCGAAGAACATCAACATTCAATTGATATAACATCGCCTACAATAATTAAACCCGAGCCAACTCCATATATTGCATCTAGTCTAAGTAGTATGAGAAACTCTAAACAGGAAACAAGCACTGAATCAGAAACACCTCTGGAAAGTTCTCAAGAGAGCTTGGATGAAGATCAACCGCCACAATTAGGCACTcacAAACCTGATAACGAATCCAACATAAGTGTTGTTCAATCCATGGGAACAAATGTAGTTGAAATGGCTGGGCCATCGGTTTCTGCTAGCTGTTCCCAAAGTACGCAACATCCAGGACTGCAATGGACATTGGTTGAACACAGTTATCCCCGATTCGCGCTCTCGTCGTGTCAGACATCAATGGACGGAACAACACCCACTGCTCCCCCCACATCACAAGCAGTTCCAATGCAATATTCTACCCCATCCTACCCTTCTCAAGTAATCAGTGTAAATTCGTGTGCAGTAGTTGGAAATTATCAAAATAACGAATCCGATCACAATAACACTTCTCCTCAAATAATGGGTAGTCCAGGTGTCACAAATTATCATCCTTCACCTTGTCCCTCTCCTAGTAGTCAACAAGTAACCACAAATAATACACCACGCCCCAAAAGATCAAAGAATCCACAAGCAGAAGAAAATTTTGTAAGAGCTATTGAAGCAGTAAGATTTGGCGGAATTGGCTTTTGTAAAGCGGCAAGAATGTATGGAGTCAATAATCGTACATTATGGTTGGAATTCAAGAAACGTGGCTATCCAAATACACGACCAAGTATAAAGAATAGAGTAAAGTTAGAAAATTTATCACCTCCTCCTCCTCCAGCACCTGTTTCACAACCAGAAGAGTACGCTACTCCAAGTCCTACGGTAAGCATGCCTACGTCAGAGGCCGGATCCGTGATGTGTCCACCGCATCCTATGGGTATGATGGGTTTCCTGGATACAAGACATGTTGAATTTTCACCGGGAATGCATGCCATGTCACGTCAACGGTTTCCAGATGGACCAGTTAATATGAATCCGTCTCCAATTAATTTACACGGCGTGAATTATAACACCATGTGA
- Protein Sequence
- MSVQQFCLRWNNHQPNFISVFSNLLLNESLVDVTLAAEGRHLQAHKVVLSACSSYFQSLFTINPCQHPIVILKDVKYNDLKTMVDFMYYGEVNVSQEQLPHILKTAEMLKIKGLAEMPDSTSLTKSQSTSSDRAEILTPGDSTWGSDPHRHTPSPSPMSPNSRRKRLRKSSTGSGSLSTERNSEEHQHSIDITSPTIIKPEPTPYIASSLSSMRNSKQETSTESETPLESSQESLDEDQPPQLGTHKPDNESNISVVQSMGTNVVEMAGPSVSASCSQSTQHPGLQWTLVEHSYPRFALSSCQTSMDGTTPTAPPTSQAVPMQYSTPSYPSQVISVNSCAVVGNYQNNESDHNNTSPQIMGSPGVTNYHPSPCPSPSSQQVTTNNTPRPKRSKNPQAEENFVRAIEAVRFGGIGFCKAARMYGVNNRTLWLEFKKRGYPNTRPSIKNRVKLENLSPPPPPAPVSQPEEYATPSPTVSMPTSEAGSVMCPPHPMGMMGFLDTRHVEFSPGMHAMSRQRFPDGPVNMNPSPINLHGVNYNTM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01137000;
- 90% Identity
- iTF_01137000;
- 80% Identity
- iTF_01137000;