Pger024544.1
Basic Information
- Insect
- Panorpa germanica
- Gene Symbol
- bab2
- Assembly
- GCA_963678705.1
- Location
- OY783213.1:6108848-6119714[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 8.2e-13 2.8e-09 37.6 0.0 1 39 418 457 418 461 0.91 2 4 5.6e-13 1.9e-09 38.1 0.1 1 39 472 510 472 513 0.94 3 4 2.7e-19 9.1e-16 58.3 0.0 1 45 527 572 527 572 0.97 4 4 6.2e-20 2.1e-16 60.4 0.0 1 44 579 623 579 624 0.96
Sequence Information
- Coding Sequence
- ATGGCTTCTAGTATACCTGGACAGCATTATTGCTTGCGATGGAACAACTACCAAAGCAATATGACATCAGTATTTCACCAACTGTTGAGGACAGAAGCATTTGTCGACGTCACTCTTGCGTGCAATGACTTATCACTGAAAGCGCACAAGGTGGTCCTTTCGGCTTGCTCcgcatattttcaaaaactgttGCTGGAAAATCCTTGTAGTCATCCCACAATTATAATGCCTCAGGATGTGTGCTTCGCTGACCTTCAATTcattattgaatttgtttatcGTGGAGAAATAGATGTTTCACAAGAAGAATTACAGTCGTTACTGAAGACAGCTGATCAACTAAAGATAAAAGGACTTTGTGAAGTTCGTGATGGTGGAAAGGATATCAATACTGCAGATATTGATCCTCTAGCACTGCCAAAACAATCTTTTGCAAAAGTTCGTcgattatcaaatattaataaacggCCCCATAGCGCCCTGGATTGTTCAACAAAAATTAGCGGAATAGGGTTACAAGACTCGTTTGGCGATGACAAAGATTTggATGATAAAagccatttaaaatatttagttcaaGATTTCTCTGCAGCAGCAGAAAGGAAGGCTAACCAGATACAACGGTCCGACGTTGGGACAAGTACAGATAATGATGCCGAAATGCCGTTAGTTATTTTGGAGAGTCATCACGCGGCCACTCGACCGCAAGCCGCCAATATGACAAATCATGGTATAATGCCATCACATGTAGGATTCCAGaGTTTCTTTCATGGAGCGGGTATGTGTGATGAGTATGCTCCAGAACCTCCTGGGCCTTCTGCAACTCCAGTTACAGAACCAAATACCATATTAGATCGCAGAGATATATCAGacACCATGGTGCTAGATGGAGAAGTTAAAATTAAGTTTGAAACACTCCGTGCGATGGATCAGAGTGATACTTTGGATATAGATAGTCATATGTCGCAGCATTCTATGGGATCACAACACTCAGAACATTCACTTAGTAATTCTGGAACAAGTCCACACAATAATCATGAAGTCCTCGGGCACAGTGTAGGAGGTCATTCGATGTTAGTGACACCTGAGTTACTTGGTTTACTTCCATCTAGTAGTCATTCTGATTTATTATCTGAAGGTAGCAATGAACCTATGATGAACTCTAATGGTTTAGTGGGGCATTCTGTCGGCACTTGTGATACAAGCAGAACGAATGATACGCACAGAACTCCTAGTGGACCAAAAACTTGGTCACCAGAAGATATGGAGTTAGCGTTAGACGCTTTGAGAAATCACAACATGAGTTTAACAAAAgctTCGGCTACATATGGAATACCTTCAACTACATTATGGCAAAGGGCTCATAGACTTGGTATTGATACTCCAAAAAAAGAAGGTCCAAGTAAGAGTTGGAGTGAAGATAGTTTAAATAGTGCTTTGGAAGCACTGCGTACAGGAACAATATCAGCAAACAAAGCAAGTAAAGCATACGGTATACCTAGTAGCACATTATACAAAATAGCTCGTCGAGAAGGAATTCGTCTTGCAGCGCCTTTTAATGCAGCCCCCACTACATGGAGTCCTGAAGATTTAGAAAGAGCACTGGAAGCAATTCGATCTGGACAAACAAGTGTACAAAGAGCCAGTACAGAGTTTGGAATACCCACTggAACTCTTTATGGTCGTTGTAAAAGAGAAGGTATAGAATTATCTAGATCGAATCCAACTCCGTGGTCTGAAGATGCAATGGGTGAAGCACTAGAAGCTGTTCGTGTGGGACAAATGTCTATAAATCAAGCAGCAATACATTACAATCTTCCATACTCATCACTATACGGGAGGTTTAAAAGAGGTAAATACGACACAGAGCCTAATAACGGAAGTGGAAATAGCTCTAACATGGAAGGGTCACCTTCAGAAGTACGAGATTACTATGATTGA
- Protein Sequence
- MASSIPGQHYCLRWNNYQSNMTSVFHQLLRTEAFVDVTLACNDLSLKAHKVVLSACSAYFQKLLLENPCSHPTIIMPQDVCFADLQFIIEFVYRGEIDVSQEELQSLLKTADQLKIKGLCEVRDGGKDINTADIDPLALPKQSFAKVRRLSNINKRPHSALDCSTKISGIGLQDSFGDDKDLDDKSHLKYLVQDFSAAAERKANQIQRSDVGTSTDNDAEMPLVILESHHAATRPQAANMTNHGIMPSHVGFQSFFHGAGMCDEYAPEPPGPSATPVTEPNTILDRRDISDTMVLDGEVKIKFETLRAMDQSDTLDIDSHMSQHSMGSQHSEHSLSNSGTSPHNNHEVLGHSVGGHSMLVTPELLGLLPSSSHSDLLSEGSNEPMMNSNGLVGHSVGTCDTSRTNDTHRTPSGPKTWSPEDMELALDALRNHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGPSKSWSEDSLNSALEALRTGTISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWSPEDLERALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYDTEPNNGSGNSSNMEGSPSEVRDYYD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01137022;
- 90% Identity
- iTF_01137022;
- 80% Identity
- iTF_01137022;