Basic Information

Insect: Pandemis heparana
Gene Symbol: -
Assembly: GCA_963854515.1
Location: OY978020.1:12055109-12060816[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 6.9 4.6e+02 2.3 1.5 3 23 99 121 97 121 0.87

2 8 0.26 17 6.8 3.7 1 23 136 160 136 160 0.96

3 8 0.00038 0.025 15.7 0.1 1 23 231 255 231 255 0.97

4 8 0.0041 0.27 12.5 1.1 3 22 263 282 261 282 0.94

5 8 0.00028 0.019 16.1 0.3 2 23 292 313 292 313 0.97

6 8 0.02 1.3 10.3 0.1 1 23 317 340 317 340 0.96

7 8 0.001 0.068 14.4 5.6 1 23 348 370 348 370 0.96

8 8 0.16 11 7.4 0.8 1 23 399 426 399 426 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	6.9	4.6e+02	2.3	1.5	3	23	99	121	97	121	0.87
2	8	0.26	17	6.8	3.7	1	23	136	160	136	160	0.96
3	8	0.00038	0.025	15.7	0.1	1	23	231	255	231	255	0.97
4	8	0.0041	0.27	12.5	1.1	3	22	263	282	261	282	0.94
5	8	0.00028	0.019	16.1	0.3	2	23	292	313	292	313	0.97
6	8	0.02	1.3	10.3	0.1	1	23	317	340	317	340	0.96
7	8	0.001	0.068	14.4	5.6	1	23	348	370	348	370	0.96
8	8	0.16	11	7.4	0.8	1	23	399	426	399	426	0.96

Sequence Information

Coding Sequence: atgaCCGAAGCAAGTGATTTAGATAAAGACGACACTCAGTCTCAGTCTAACACAGAATTGCGTTATAGTTTTTGCAAAGACTGGGTTGAAAAACAGAATAACGAGATTGCGAGAAAGTTATCTCAGCAGAATAAGAACGATATTCAGTTCATAATTCAGACTAACGCGGATCGAAAGAAGTTTTTGCTGTCGGCTGCGGAAGATGTGGCGACTGTCCCCGGCGGTGTGGACGAGCCCTCAGTAGAACCTAAAGCTGTGGCTCTCCATCGATTGCGTAAGGATGTTCAAATGGAATGTGAATGGAAGTCTTGTAACCAGTTATTTGATGACTATGATGAGTTTCAGACTCACTGCCGGAATCATATTTCTGACTTACATGTTTCCGAGAAAGATGGTACAACTTATTACACTTGTCTCTGGGATATATGCAAGCACAAGACCTCTGATTTCGATGAGGTGTGCCGTCACATGAACTATCATGCTTACCATGCAAGACTTTTAGCTATTGGCTTAAATGCGAGAACTACGCTAAACCTGGTCCGTTGCAGGAAAGACTCGAGTCAAAGGAACAAGCTGCCGATATTGAATACTGATTATTGCTGTATGTGGGTTGACTGTGAAGAGAAGTTTAAGTGTATGCAGATATTCCTAGACCACGTAAATGTCCACATACATTACGCGTCCCCAAAGCACCAGTGCTCTTGGGCCGGGTGCGGTGCCGCCTTCCCTCGACGGGCGCTGCTGTCCATCCATGTTCGTTCCCATACTGGGGAGAAGGTCATAGCGTGCTACCACTGCGGGGCGCACTTTGCCTCCAACAGGAAGCTGACTGACCATCGGAGGAGACAGAATGTTCAACCAACTAACGAGAACACTTGTTCAGTCTGCGGCTTTTCTTACGCTACAGAGTACTTGCTCCGCCAACATGCTCGCCAGCACGTCTCCCAATACGCTTGTACGCTGTGCGATATGTCTGCGCCAACATTGGCCACGTTGGCCCAACATGTGCGCTACAGGCACATTGGCCCTGAATGTAGGATGCATGCGTGCCCGCACTGCAAGCATAAAGCAATAACAAAATCCGATCTCAGCAAGCACATGCAGACCCACACACGCAAAAAGCAGAAGAGAAGACAAGAGAGGGAATCCGACGATACCGACCAAGAAGTAAACACTAAagctaagaagaagaagtatgCATGCCACATGTGTCCGGAGAAGCAGATGAAGGTGTTCTCGAGGGGGAACCGGCTCACGACGCACCTGGAGAAGGCACATGGGGCACAGTGGCCCTTTGGACACAGTCGATTCAGGTATCAAATAAGCGAAGACGGTATGTATCGTCTCACTACAACCCGATACGAGATCCTAGAGGTCTCTAAAAAGATAGTGGACGGTTATAGCGGACCCAGAGACTCTCTGTCCAACACATTCGAGTTCAATGTGGAGGAGATATCAAAAGCTACCGCGACTACACCTACTCGCTTTGAAATAACACTAAAAGGTGAGACCGCTGAGACTAGTGAGACACTGAGTGACAACGCGGTTGAAATCACTATGTGCGATGTGGATGAAGAAGGTAATATTATAAGTTCTGAAGTTATTAAGTCTGATGTTGTTATGAGTGATTTGAGCAATGTTAtgtga
Protein Sequence: MTEASDLDKDDTQSQSNTELRYSFCKDWVEKQNNEIARKLSQQNKNDIQFIIQTNADRKKFLLSAAEDVATVPGGVDEPSVEPKAVALHRLRKDVQMECEWKSCNQLFDDYDEFQTHCRNHISDLHVSEKDGTTYYTCLWDICKHKTSDFDEVCRHMNYHAYHARLLAIGLNARTTLNLVRCRKDSSQRNKLPILNTDYCCMWVDCEEKFKCMQIFLDHVNVHIHYASPKHQCSWAGCGAAFPRRALLSIHVRSHTGEKVIACYHCGAHFASNRKLTDHRRRQNVQPTNENTCSVCGFSYATEYLLRQHARQHVSQYACTLCDMSAPTLATLAQHVRYRHIGPECRMHACPHCKHKAITKSDLSKHMQTHTRKKQKRRQERESDDTDQEVNTKAKKKKYACHMCPEKQMKVFSRGNRLTTHLEKAHGAQWPFGHSRFRYQISEDGMYRLTTTRYEILEVSKKIVDGYSGPRDSLSNTFEFNVEEISKATATTPTRFEITLKGETAETSETLSDNAVEITMCDVDEEGNIISSEVIKSDVVMSDLSNVM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00342743;
90% Identity: iTF_01135319;
80% Identity: -