Basic Information

Insect: Pandemis heparana
Gene Symbol: -
Assembly: GCA_963854515.1
Location: OY978033.1:7386393-7402611[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.0099 0.66 11.3 0.8 1 23 244 266 244 266 0.98

2 10 0.0051 0.34 12.2 0.8 2 23 274 295 273 295 0.97

3 10 0.0049 0.32 12.2 0.6 1 23 299 322 299 322 0.96

4 10 0.017 1.1 10.6 2.7 1 23 329 351 329 351 0.99

5 10 0.00092 0.061 14.5 0.8 2 23 358 379 357 379 0.96

6 10 2.5e-06 0.00017 22.6 1.3 1 23 385 407 385 407 0.97

7 10 0.00089 0.058 14.6 1.9 1 21 412 432 412 437 0.92

8 10 0.0096 0.63 11.3 0.1 1 23 445 468 445 468 0.93

9 10 0.00079 0.052 14.7 0.6 1 23 474 497 474 497 0.95

10 10 1.4e-05 0.00093 20.2 2.2 2 23 503 524 502 524 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.0099	0.66	11.3	0.8	1	23	244	266	244	266	0.98
2	10	0.0051	0.34	12.2	0.8	2	23	274	295	273	295	0.97
3	10	0.0049	0.32	12.2	0.6	1	23	299	322	299	322	0.96
4	10	0.017	1.1	10.6	2.7	1	23	329	351	329	351	0.99
5	10	0.00092	0.061	14.5	0.8	2	23	358	379	357	379	0.96
6	10	2.5e-06	0.00017	22.6	1.3	1	23	385	407	385	407	0.97
7	10	0.00089	0.058	14.6	1.9	1	21	412	432	412	437	0.92
8	10	0.0096	0.63	11.3	0.1	1	23	445	468	445	468	0.93
9	10	0.00079	0.052	14.7	0.6	1	23	474	497	474	497	0.95
10	10	1.4e-05	0.00093	20.2	2.2	2	23	503	524	502	524	0.97

Sequence Information

Coding Sequence: ATGAACGAATTTTTTGTAGCAGACGCCAAATACACTTGCCGTGGTTGCTTAAAGATAAGCAACGAACTTTCCACAATGACTCCGGAGGAAATATCGGCGTTTAAAAATCACGTTAAGgtTGAAAGCACAAACACCATCATGAAAATTTGCTACATCTGCCGTTACATGTTCCATAAATTTGAAAGATTCATCAAACAATGTCAGAAAAGTAATGAAATCATCAACAATCTGCTGGAAGAGGACCACATATTCCAACTATCCAAGCATAAACTACATCAGAACTTTGTGACTACCCTACCACAACACCACTATCTAGGCCCAGAGATAGAAGTGACACCAAATTATGATTACGATGAGTTTAAACATTATGACGGCACATACAAAAATGATGATGTAGAAAAATATTGTGATGAGATAGTATCACATTGTGATGACATAGAcataaatgatgatgatgtgccTCTGGTTATGTTAAAGGAGGTTAAGAAGGAAATCGAGGTTaaagttaaaaagaaaaagaagaaactgcgaaataaattgaataacCAAGGGACCCAAGACTCTGCTGAATCGAAGAGTAAGAATGAAATGAAAAGGCAACTGAAGGAGGGATTCAGCTCTAGAATGGTGCAGGAAACAAATGAATACGAGGTCATCAAACTTACTAAAGAACAGGTTTTACAAGAAATGGTGGAGAAATGTAAGAGCGATAAATATCAGAGATCCGTATACAAATGTGAGATGTGTGCTAAAGGGTTCAACTTCAAAGACGTCATAGACAGCCACATGAAGAAGCATTCTCAGGAGCATGGAACGCTGAGGTGTGAAATATGTACACAATACTGTCCGAGCGCCGTTTCTCTGAGGGGGCATATGAAGTCCCACACCACGAGATACAAGTGCAAGGTGTGCGGTGCGGTGCGTATATCTCGCCAGCACCTGTTGGAGCACTACTCCATAGAGCACACGCACGACGCCGCCCTCTACACCTGCGACCAGTGCAGTTTCACATCCAAGACCCGCACAGTGATGCAGCGTCACGTGAAGACGCATAAGACGGGGAAAACGTTGACGTGCAGCATATGCGGGGTCGGGTTCTCCAACATGCACACGCTCAGGATGCACGCCTCCCGCCACGATCCCACGCAGCGCTTCGACTGTCCGCAGTGCAACATGAAGTTCATATACCCGTCCCTCTTGCACCGGCACATGCGTGTTCACTCGCACCGCGACCACTACTGCGTCGAGTGTGACATTACCTTTAAATCTCTAgataatttaaaattacatttcaaaagAGCGAAGAGGCATCGAGACCCGTCGACGTACAAGTACAAATGCTCGCAATGCTCTGAGCGCTTCATCGCGCCGTCTTCGGTGCTGGCCCACCAGACCGCCGCGCACGGCGCAGCCAAGACACACGCGTGCCCGCTCTGCGGCAAGCTGTACAGCAGCCGCGAGAGTGTGCGCTCCCACGAGCGGCGCGCGCACAAGAGGGACGCGCTCAGCTGCGACGTGTGCCATAAGGAGTTTAACCGCAAATATGTCCTCGCGAAACATTTACGCACCCACACCGACATTCCGGACGGATGCTGCGGCGTGTACGCGTCTACGAAGCATAAGAAACATGACGACTCGACCAACGAGATTCAAGTAAACCACGAGACTTGA
Protein Sequence: MNEFFVADAKYTCRGCLKISNELSTMTPEEISAFKNHVKVESTNTIMKICYICRYMFHKFERFIKQCQKSNEIINNLLEEDHIFQLSKHKLHQNFVTTLPQHHYLGPEIEVTPNYDYDEFKHYDGTYKNDDVEKYCDEIVSHCDDIDINDDDVPLVMLKEVKKEIEVKVKKKKKKLRNKLNNQGTQDSAESKSKNEMKRQLKEGFSSRMVQETNEYEVIKLTKEQVLQEMVEKCKSDKYQRSVYKCEMCAKGFNFKDVIDSHMKKHSQEHGTLRCEICTQYCPSAVSLRGHMKSHTTRYKCKVCGAVRISRQHLLEHYSIEHTHDAALYTCDQCSFTSKTRTVMQRHVKTHKTGKTLTCSICGVGFSNMHTLRMHASRHDPTQRFDCPQCNMKFIYPSLLHRHMRVHSHRDHYCVECDITFKSLDNLKLHFKRAKRHRDPSTYKYKCSQCSERFIAPSSVLAHQTAAHGAAKTHACPLCGKLYSSRESVRSHERRAHKRDALSCDVCHKEFNRKYVLAKHLRTHTDIPDGCCGVYASTKHKKHDDSTNEIQVNHET

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00155625;
90% Identity: -
80% Identity: -