Phep012127.2
Basic Information
- Insect
- Pandemis heparana
- Gene Symbol
- -
- Assembly
- GCA_963854515.1
- Location
- OY978016.1:12240134-12246042[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0053 0.35 12.1 0.1 5 23 128 146 127 146 0.94 2 11 3.5 2.3e+02 3.3 1.6 3 23 152 175 150 175 0.84 3 11 0.28 18 6.7 3.7 3 17 182 196 180 199 0.89 4 11 0.0038 0.25 12.6 0.2 2 20 212 230 211 230 0.96 5 11 4.9e-05 0.0032 18.5 1.4 1 23 239 261 239 261 0.97 6 11 0.0045 0.3 12.3 0.3 1 23 267 290 267 290 0.93 7 11 0.00081 0.054 14.7 0.1 3 21 297 315 296 316 0.92 8 11 0.24 16 6.9 0.1 3 23 322 340 320 340 0.72 9 11 0.0029 0.19 13.0 0.1 1 23 346 368 346 368 0.95 10 11 1.4e-05 0.00089 20.3 1.7 2 23 375 396 374 396 0.98 11 11 9.7e-06 0.00064 20.7 2.9 1 23 402 424 402 424 0.98
Sequence Information
- Coding Sequence
- ATGGACTTATGTAGAGCGTGTTTGTCTTCAGACGTGGAATTGTTTATATTCGATGATATTTTTGTTACTAATTACAATTTGCTTACGAGTTTAAACATCGAGCTATCAGATGGGAAGTCCCAACATTTCTGTCAAACTTGTGCAGAAACTGTGAACTACTTCATAGAATTCCGAAATAAATGTACTTCTTCTGAGTTGGCTCTGCAACACATCTGCTCTAGTCAAACAGTTAAATTGGAAAAGCTGGTTCAAGATGACAACCTGTTGACTATAAAAGGGGAGATTAAACATGAAAGTTATGATTCTAGTTATGAAGTTGGGTTTGATACCATATCGGAATATGAAGATGAGAATGGAATCAAAGTGAAAAACGAAATTGGGTTGTGTGGTAAGCTATTTGATGACAAAGATAAATTGAACAAGCACTTGGAAGAGCACAAAACAGACCGCTGTTGCCGTCTGTGCCCGGTCCTAACAACGAGGTTCGAGCACTGGCCGCAGCTGCTAGCTCACCGGCTGCTGCATACGGTCAAGAATCAGCATTGCCACTTGTGTGATCAGAAATTTAGATCACACACCCATCTGGAGTTCCATTATTGGAAGGTCCACTGTGGTGTAAATACCGCCGCTCTTacctgcgtaatttgtctaaaaAAATTTCCTACTCCAAGAAAGTTATCAAAGCATATGTGGTGCTCACATTCAACAAGGAAGTACGTTTGCGATATCTGTTCCAAAGTGTATCATAACAAACAGCAGTTGAAATCACATATATCGGGGCATAGCGACGTGCGCCGCTTCGTGTGTGATTTGTGTGGATATAGTAGTAAATATATTAGTGGCCTTAAAGCTCACAACATAAGAAAACATTCACCTGATAAACGAATTTGTAATATCTGCGAAAGAGTTTTTGCTGATCCTGAAAAACTGGCGAAGCATGCTTGTACGGAAAACAGTCAAATATGTCCTATTTGCGGAAAAAGTCTACGAAAAGGGATGGCCCGTCACGTGGCTACgcacggcgcggcgcggcgctacgcgtgcgcgcgctgcccgGCCACGTACCGCAGCCGCTCGGCGCTCAAGGTGCACGGCGACAAGCACGACAACAACCCCACGCAGCAGTGCGAGGTCTGCCACAAGCGGTTCTACTCGCCCTCCGTGCTCATCAAGCACCGCCGCGTCCACACAGGAGAGAAACCATATGCCTGCAAGAAGTGCCACATGCGTTTCACTGGCAACAATAATCTCAAGGTCCACATGAAGGTCCACGGGGAGATGCTCATCGTCAAAAAGAACGCGGAGGCGGAGGCAACCTCCGCCGTTACCAAACTTGAGTAG
- Protein Sequence
- MDLCRACLSSDVELFIFDDIFVTNYNLLTSLNIELSDGKSQHFCQTCAETVNYFIEFRNKCTSSELALQHICSSQTVKLEKLVQDDNLLTIKGEIKHESYDSSYEVGFDTISEYEDENGIKVKNEIGLCGKLFDDKDKLNKHLEEHKTDRCCRLCPVLTTRFEHWPQLLAHRLLHTVKNQHCHLCDQKFRSHTHLEFHYWKVHCGVNTAALTCVICLKKFPTPRKLSKHMWCSHSTRKYVCDICSKVYHNKQQLKSHISGHSDVRRFVCDLCGYSSKYISGLKAHNIRKHSPDKRICNICERVFADPEKLAKHACTENSQICPICGKSLRKGMARHVATHGAARRYACARCPATYRSRSALKVHGDKHDNNPTQQCEVCHKRFYSPSVLIKHRRVHTGEKPYACKKCHMRFTGNNNLKVHMKVHGEMLIVKKNAEAEATSAVTKLE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01135114;
- 90% Identity
- -
- 80% Identity
- -