Phep025278.1
Basic Information
- Insect
- Pandemis heparana
- Gene Symbol
- -
- Assembly
- GCA_963854515.1
- Location
- OY978032.1:7610848-7613517[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.01 0.66 11.3 3.6 1 21 3 23 3 24 0.95 2 18 0.15 9.8 7.6 0.3 1 23 65 87 65 88 0.93 3 18 0.19 12 7.3 0.6 2 23 114 136 113 136 0.95 4 18 0.021 1.4 10.2 0.4 2 23 159 180 158 180 0.94 5 18 0.0003 0.02 16.1 0.0 1 23 184 207 184 207 0.97 6 18 0.057 3.8 8.9 2.1 1 23 211 234 211 234 0.97 7 18 0.38 25 6.3 0.8 1 23 239 264 239 264 0.94 8 18 0.36 24 6.4 0.2 2 23 321 343 320 343 0.94 9 18 0.00068 0.045 14.9 0.4 2 23 413 434 412 434 0.96 10 18 0.031 2.1 9.7 0.4 1 21 438 458 438 459 0.94 11 18 1.8 1.2e+02 4.1 0.1 1 23 500 523 500 523 0.92 12 18 0.23 15 7.0 0.2 2 23 549 571 548 571 0.95 13 18 0.025 1.7 10.0 1.6 2 23 595 616 594 616 0.94 14 18 5.8e-05 0.0039 18.3 0.0 1 23 620 643 620 643 0.97 15 18 0.0094 0.62 11.4 0.6 1 23 647 670 647 670 0.98 16 18 4.5 3e+02 2.9 1.3 1 23 675 700 675 700 0.91 17 18 0.096 6.4 8.2 5.7 1 22 709 730 709 732 0.88 18 18 0.0041 0.27 12.5 0.2 1 23 742 765 742 765 0.96
Sequence Information
- Coding Sequence
- ATGAATTTTTGCTGTGATAAGTGCGGTACGACTTTTATATCAGATCACGCTTTGCGCGACCATCATCGTCAGGTCAAGTGTTGCAGAACGGCGTACAAAGCTCGTAACGGTAGGGTTATGCGGTCCCGGCGGAATGCAGAGCTGATACTGCAGTGGTCTACCGCTTGCCCCTTCAGAACGTGGAAGAGTAATTTCAGCTGCGTATTCTGCCGCGTACAAACGAGTGATCCAAGTGGTCTTCGGAGCCACGTGGCCGCTCATCACGCCGATTATCACGTTCAAGACGCGTTTTACAGAAAACTAGGAAAGGAATTCCTAAAAATTGATATCACTAATCTACATTGTAAACTCTGCTTTATGCCTATTGAGTCATTAGACGCTCTGACAAACCACTTAAAAACCGACCATCAACAGCCTATAACAGACGAACAGCTTGGCGTTATACCGTTCCGTCTGAATGACGGGTCTATTTGGAAGTGCACTATTTGTCCGAATCAGTTCCAAGACTTTGTGTCACTGAAGAAACATACTGCCGAGCATTTGCAAAACTATGTGTGCGATACGTGTGGAGAGGGTTTCATCACTGAATCCGCTATGATCGCTCACACAAAAATACCACATGAAAACAAATATAACTGCAGCCGGTGCGTGGCCACTTTCTCGTCACTGGACGAGAGAAACCACCATGTAAAAACTCAGCATACAAACACACCTTACATGTGCAATTATTGTAAAGATAAACCACGTTTCTCAAATTGGGAACTCCGCAAGAAACACTTGATGGAAGTCCACAACTATAGTTCCGggCCAAAGGAAAGAGCGGAACGTACTGAGACCGAACGTAAATCGAAAAAGAGACTATTCGAAAGATCGGTTAACCAGAACCCGCAGCGTCAAAACGCTGTACTGATACTTAAGTACTCTACCGCGTTCCCTTTTAAAACACGTTTTAATAGGATAGTCTGTTCGTACTGTCATGACGAGTTTGAGCCTATGACGGCGTTGAGGAGTCACATCAAAGCCGACCACGCGAATGCTGATTACAACAGTGCATTCTACAAGGTTGTAGAcgccttgaaaatagatataaCTGAATTCAAATGCAACCTGTGCTCACAAGACATTCAAAGCGTAGAAATATTTATGAACCATCTATCTCGGGATCACGGTAAAACGGTTAACTTTGAAGTTCCATTTGGAGTTCTGCCCTACAGGCAGGGACCCACGGGACTATGGATGTGTCTGGATTGCGATAAAACGTTCTCCGAATTCTCCCAAATAAATGGTCATTTGCGGAGTCATGTTAAGATATTCACTTGCGAGAAGTGTGGAGCGACGTTCTTGTCCGAACATGGTTTGAGACAGCACGAGCGAAACTTCAAGTGTTACAAGGCAACTTATAAACCTCGCTTCGGGAAGGCACTGAAGCATCGTAGCAATACTGAGATAATTCTACAGTGTTCTACAGCTCGGCCGTTCAGGACATGGGGTCAAAATTTCAACTGTGTTTTCTGTCGTGTGCAATCAAACGATCCAAATGGTCTGAGAATGCATATGGCCGCAAGACACGCCAATTTCAACATACAACATGTCTTCAGTCGTAAATTGAGGAAGGAGTTCCTCAAAGTAGACATCACAGATCTACAGTGTAAACTGTGTTACCTACGAATAGATTCTCTTGACGATCTTATAACGCATCTCAAGAATGACCACAAACAGCCTATAAATGCAGACGTACAACCTGGCGTgcttcctttcaaactaaacgACGGTACTCACTGGAAATGCGCCATTTGCACGTGTCAGTTCTCAGATTTTATCTCGCTAAAGAAACACACGGCGGAGCACTTCCAGAATTTCGTCTGTGACACTTGCGGCGAAGGTTTCATCACGGAGTCAGCTTTAATAGCCCACACTAAAATACCACACGACAACAAATATAGTTGCAGTCGGTGCGTCGCCACTTTCACCACTTTGGAAGAAAGAAATATTCACATCAAAACACAACACACTACCTTACCTTACATGTGCGCGCACTGCAAAGATAAACCTCGGTTTGCTACTTGGGAACTCAGGAAGCGTCATCTCATGGAGTTTCATAACTACAAGCCTGGGGCTGAAATGTACGAGTGCACGACTTGCCACATGACTTTCAAGACTAGGTCTCAGAAATATCACCATAACGTTAAAGCCCATAGGACTAAGAAAGAGACGGAGTATGGGTATCCTTGTGGTAGCTGTTCTAGAGCTTTTGCTACTAAATTGTCGTTGGATAAACATATTGCCAAGAAGCATTTCCACGTTTGA
- Protein Sequence
- MNFCCDKCGTTFISDHALRDHHRQVKCCRTAYKARNGRVMRSRRNAELILQWSTACPFRTWKSNFSCVFCRVQTSDPSGLRSHVAAHHADYHVQDAFYRKLGKEFLKIDITNLHCKLCFMPIESLDALTNHLKTDHQQPITDEQLGVIPFRLNDGSIWKCTICPNQFQDFVSLKKHTAEHLQNYVCDTCGEGFITESAMIAHTKIPHENKYNCSRCVATFSSLDERNHHVKTQHTNTPYMCNYCKDKPRFSNWELRKKHLMEVHNYSSGPKERAERTETERKSKKRLFERSVNQNPQRQNAVLILKYSTAFPFKTRFNRIVCSYCHDEFEPMTALRSHIKADHANADYNSAFYKVVDALKIDITEFKCNLCSQDIQSVEIFMNHLSRDHGKTVNFEVPFGVLPYRQGPTGLWMCLDCDKTFSEFSQINGHLRSHVKIFTCEKCGATFLSEHGLRQHERNFKCYKATYKPRFGKALKHRSNTEIILQCSTARPFRTWGQNFNCVFCRVQSNDPNGLRMHMAARHANFNIQHVFSRKLRKEFLKVDITDLQCKLCYLRIDSLDDLITHLKNDHKQPINADVQPGVLPFKLNDGTHWKCAICTCQFSDFISLKKHTAEHFQNFVCDTCGEGFITESALIAHTKIPHDNKYSCSRCVATFTTLEERNIHIKTQHTTLPYMCAHCKDKPRFATWELRKRHLMEFHNYKPGAEMYECTTCHMTFKTRSQKYHHNVKAHRTKKETEYGYPCGSCSRAFATKLSLDKHIAKKHFHV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00028037;
- 90% Identity
- iTF_00149786;
- 80% Identity
- -