Phep026918.1
Basic Information
- Insect
- Pandemis heparana
- Gene Symbol
- -
- Assembly
- GCA_963854515.1
- Location
- OY978035.1:4551383-4575016[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0011 0.071 14.3 0.0 1 23 677 700 677 700 0.92 2 12 0.33 22 6.5 0.9 1 22 704 725 704 727 0.84 3 12 0.00036 0.023 15.8 2.6 1 23 733 756 733 756 0.96 4 12 0.00056 0.037 15.2 2.6 1 23 762 784 762 784 0.99 5 12 0.00079 0.052 14.7 0.9 2 23 792 814 791 815 0.94 6 12 6e-06 0.00039 21.4 1.7 1 23 820 842 820 842 0.98 7 12 0.00026 0.017 16.3 0.2 3 23 850 870 848 870 0.97 8 12 0.13 8.8 7.7 2.0 1 23 875 897 875 897 0.98 9 12 7.3e-06 0.00048 21.1 2.7 1 23 905 927 905 927 0.95 10 12 0.0038 0.25 12.6 4.2 1 23 933 956 933 956 0.96 11 12 0.00023 0.015 16.4 1.0 1 23 990 1012 990 1012 0.98 12 12 0.00021 0.014 16.5 1.8 1 23 1018 1041 1018 1041 0.96
Sequence Information
- Coding Sequence
- ATGAGACCTTTAAAGTGCTGTGTTACCGGTTGTGCCGCAACAAGTGACACGCACCGGCTCTTTTGTTTTCCGAAAAAGGACTCTCTGAGAAATCGTTGGTTATCCTACCTGGTGCCAGTGGCTTCTTCACTCCTGGGACTATCAAAAGAGCAGTTACGGAACAGACGCGTTTGTGAAAAACATTTCGACAAACATCAGTTTGACCGTGAAGGCCGAAGACTTCGGTATTCCTATCCCTGCTTATTTACTGACGCTGAAATTGCACATGGTGAACCACTTTCTACATCTGGAGTAGtgtatgaTGTTCTAAATGAACACAATTACTACAAGGAGCAAGACGATATGGATGATGATATGACAGAGGCTGTGTTGGTTATTGGACGCCCAGGTGAAGATTTCCATGAACATCCTTCATGCTCACAGCAGCAAACAGTCACAGCAGCTAAAGAAAAAGGTGAAGATTTCCATGAACATCCTTCATGCTCACAGCAGCAAACAGTCACAGCAGCTAAAGAAAAAGacgcTGCAATGAAAAAGTTTGGgtcaaagaaaagaaaatacatCAAACATGTAAGAACACTTACAAATAATAGCTTGGGCCACACCAGCACAGAGAGACTCGCCCAGGCTCAGTCTTGTGCACGCAATGAGGCAttatttacaaattttaatttattgagcAAACAAGCTCAATCATTTTTACTTATGCAGTTGCGACAATGTCGGCAAAATAAGATGTCCAGACGATTTAGTTTGGAGGATAAGCTAACAGCTTTAGCTTTAATGAAACAAAGTCCAAAAGGTTACAAGCTATTGGAAAGCATGTTTGCTCTGCCGAGCAAAAGGACACTTCATCGGTTATCCGAAAAATTAACTTTGGAACCAGGCCTAAATCCGGAAATTTTCCAGCATCTGAAAGATAAAGTCGGAAAATGGAGCACAAACCAAAAGTTATGCACTATTGTTTTGGACGAAGTATCGTTGACGCCACATCTGACTTATAGTGAAAAGTACGACAAAGTACACGGATTTGTCGATGTAGCTGGAGAAAGAAAAATGCGATTCTGCGAACATGCGTTAGTGTTCATGTTGCGAGGTGTATGTGCTCCGTGGCGCCAAAGTGTAGCGTACTATTTCTGTGAAGGAACCGTGTCTGCAGCTGCACTACGAAGTATTTTAAATCAATTAGTGTCACAAGTGGCATTAACTGGACTTATTCCGTTAGGAATCGTATGCGACCAAGGGTCAACATTTAGAACGGcgataaaacaattaaaagaaGAGACTGTACGCCAGCGGAACATACAAGGTGTTCGAGATGatGGCTCCGTGAACATAGCAGGACATGATTTGAATGTGTTTTTTGACCCACCTCATCTTTTGAAGGGTCTTCGAAacaattttttaacaaaagacATTATTTGGGAGGGAAAGACTGCATCCTGGAAAGACATCCAATTTATTTATGACTTGGACAGCAAATTAGGCCATACCAGGGCCTTACCAAAATTAACGGCCTACCACGTTGatccaaataaaattaaaaaaatgaaagtcAGCATAGCTACACAAGTTTTCAGTGCTCGAACTGCTGCTATGTTAAAATATACAAATGCACTcaAAGCTCTGTGTCGGTGTTGTCATGCGGATGGAATATTCAGGAATCTTGAGGAACAACATGTTATTGGGGACATAGCTGATAGTTTCGTTCAAACGCTGTTCAAAACTCTGGGTGTTAGTATCAAACCACCGCCAGACAATGCAAGTTTCTCAATATGCAACTCTTGCATCTCACAGTTGCAGAAAGCAACCAAATTCAAGAAAATGGTGCTGGATTGTGAAACGAAATTTGAGGAATATTGCAAAAATTCCAAAGAAGTGATTGAAATATCAATTGATGTGAAACCAACAATTGATAAGAAACCTGCCAAGAAGAATATTAAACCAAAAGagaaatccaaaaaaaaactacagaaaCCTAAAGATGAAGACTGCGTTGTCAAAGTCAAAACGGAAACCGGCGAAGTGTTTTCCTGCAAAATTTGCGGAATCACCTACGAGAATATAGAGGAATTAAACGTTCATATAGCCGACGAACACTACGTAGGCTTCAAATGCACCCACTGCGGTGAACTGTTGGCCAACGAAAGCAGATACAAGAGCCACAATTTGGAAGCACATGCGGATACCAGACCGTTTTCATGCCAGCATTGCGGCAAAAAAGTCGGCTCGAAACATTCCCTCAACCAACACATAATCTCTGTACACACCAAAGACATATACTACCAATGCGACGACTGCCAAAAGATATTTCACAACAAACAAATACTGAGGATACATATACGGAAACATTTGGGCACTTTTACTAAGCTCATCTGTGATATATGCGGGGTGGGTTGCAACGATAGGACCAATTTGAACAATCATATACTGAGAGTACACCACAAAGTAAGAGACTTCGAATGCGAGGTCTGCGGTAAAAAATTCTCGGCCTCTAAACATGTTAAAGTGCACATGCGCTCTCACACAGGAGAGAGGCCTTACGGCTGCGACAGCTGCGACAAAAGATACCCCTCCAAAGAGGCTTTGAAAGTGCACCAAAAAATACACGATAATTCAGGTTACAAGTGCAAAATGTGCGCACTAGTTTTCCCAACTCGCGGCCAGCACATATCGCATTATAAGAGCCACTTGCACGAGTCAGCTAGGTGTTATAAGTGCCATTTGTGCGACAAAGCGTTCGCCAGTAAATATTCGTTGAATCGTCACGTATTCGAGCATACAGGCGAACGTCCCTATTCCTGTGTTGAGTGTAAAAGAGACTTTAAACAGAAGCACATGTTGGTGCGGCACAACAAAAGTTTTCATAGTCCGAATAAACCGCCTGTCATCAAAGAGAAATGTGATATTTGCAAGCGAACTGTGCCGCATATAAAGAAACATATGGAAGCTCATATGAATAAGCCTTACGCTTGCCATTTGTGCGATAAGAAATATCCACAGATCAACGCTTTGAATAGACATGTGCAAAGACACAGCGGTATCAAGCCCCATGTATGTGACTTGTGCGATAAAGGCTTTGTGCAACTCAGGACGCTAAAAAAGCACAAAATGAAGGTGCATAAGATGGTCATGAAGACTGAACAGGAGGATCACTACGATAGTTTGGTTAATGCTTTCACCATAGACAATCTGAAGAGGAAACTTTGA
- Protein Sequence
- MRPLKCCVTGCAATSDTHRLFCFPKKDSLRNRWLSYLVPVASSLLGLSKEQLRNRRVCEKHFDKHQFDREGRRLRYSYPCLFTDAEIAHGEPLSTSGVVYDVLNEHNYYKEQDDMDDDMTEAVLVIGRPGEDFHEHPSCSQQQTVTAAKEKGEDFHEHPSCSQQQTVTAAKEKDAAMKKFGSKKRKYIKHVRTLTNNSLGHTSTERLAQAQSCARNEALFTNFNLLSKQAQSFLLMQLRQCRQNKMSRRFSLEDKLTALALMKQSPKGYKLLESMFALPSKRTLHRLSEKLTLEPGLNPEIFQHLKDKVGKWSTNQKLCTIVLDEVSLTPHLTYSEKYDKVHGFVDVAGERKMRFCEHALVFMLRGVCAPWRQSVAYYFCEGTVSAAALRSILNQLVSQVALTGLIPLGIVCDQGSTFRTAIKQLKEETVRQRNIQGVRDDGSVNIAGHDLNVFFDPPHLLKGLRNNFLTKDIIWEGKTASWKDIQFIYDLDSKLGHTRALPKLTAYHVDPNKIKKMKVSIATQVFSARTAAMLKYTNALKALCRCCHADGIFRNLEEQHVIGDIADSFVQTLFKTLGVSIKPPPDNASFSICNSCISQLQKATKFKKMVLDCETKFEEYCKNSKEVIEISIDVKPTIDKKPAKKNIKPKEKSKKKLQKPKDEDCVVKVKTETGEVFSCKICGITYENIEELNVHIADEHYVGFKCTHCGELLANESRYKSHNLEAHADTRPFSCQHCGKKVGSKHSLNQHIISVHTKDIYYQCDDCQKIFHNKQILRIHIRKHLGTFTKLICDICGVGCNDRTNLNNHILRVHHKVRDFECEVCGKKFSASKHVKVHMRSHTGERPYGCDSCDKRYPSKEALKVHQKIHDNSGYKCKMCALVFPTRGQHISHYKSHLHESARCYKCHLCDKAFASKYSLNRHVFEHTGERPYSCVECKRDFKQKHMLVRHNKSFHSPNKPPVIKEKCDICKRTVPHIKKHMEAHMNKPYACHLCDKKYPQINALNRHVQRHSGIKPHVCDLCDKGFVQLRTLKKHKMKVHKMVMKTEQEDHYDSLVNAFTIDNLKRKL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -