Phep024732.1
Basic Information
- Insect
- Pandemis heparana
- Gene Symbol
- -
- Assembly
- GCA_963854515.1
- Location
- OY978032.1:3243840-3246710[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 6.6 4.3e+02 2.4 0.8 1 23 86 109 86 109 0.85 2 17 1.2 78 4.7 0.3 2 23 183 204 182 204 0.95 3 17 0.066 4.3 8.7 3.4 1 23 208 230 208 230 0.98 4 17 0.034 2.3 9.6 2.5 1 23 235 258 235 258 0.94 5 17 0.026 1.7 10.0 4.3 1 23 264 287 264 287 0.96 6 17 3.4e-05 0.0022 19.0 0.4 2 23 295 317 295 317 0.97 7 17 0.00049 0.033 15.4 0.9 1 23 323 345 323 345 0.97 8 17 0.05 3.3 9.1 0.0 1 23 424 447 424 447 0.93 9 17 0.61 40 5.6 0.0 2 23 473 495 472 495 0.91 10 17 0.027 1.8 9.9 0.2 2 23 518 539 517 539 0.96 11 17 0.016 1.1 10.6 0.1 1 23 543 565 543 565 0.97 12 17 0.0018 0.12 13.6 1.2 1 23 570 593 570 593 0.97 13 17 0.38 25 6.3 1.0 2 23 601 623 600 623 0.92 14 17 0.00013 0.0086 17.2 1.6 1 23 630 653 630 653 0.98 15 17 0.01 0.69 11.2 3.3 1 20 659 678 659 681 0.92 16 17 1.2e-06 7.9e-05 23.6 0.8 1 23 687 709 687 709 0.99 17 17 6.5e-05 0.0043 18.2 2.9 1 23 715 738 715 738 0.97
Sequence Information
- Coding Sequence
- atgccaattgtcgTCAAAACCGAATCTGTCCAGGAAATTAAAGACGTGAAGTCTGAAGACAAGAATGCTCGTGTGAAAAAAGTCAAACCAAAAGCAAGTCCAAATGTAAAAGtggtcaatataaataaaataaatgtgaaagtcaAAGAAACTAAACAAAGAAAACCGTCAGAAATACAAAAGCACCGTAATAATATTAGAGTTATCCTAGAATGTACAAATGCGACGCCTATCCGCTGTTGCGGCGACATCGGCTACCAATGCTGCTTCTGCATAGACCAGTACCCTAGTCCAGCTGATCTCAAGAAACACACAATCCAGGAACACAGACGCGATCTCAAAACGAAACACGATTTCACCTGGGAAAAAACTATGACCGCTTTCCTTGTCAAACTCGATATAACGGCACTGCGCTGCGACCTGTGCGGAGCAGATATAGACTCTCTAGAAATACTCACGACACATTTAATAGAAAACCATGGAGAGACACTATACACAGACATAAAGAGTCACGTGCTACCGTTTAAGTTTAAAGACGAGACGTTGAGATGCACCTTCTGTGCAAATGTTTACAACTCCTTCAAAGTCCTGCAAGAACACATGATAGGGCATTATACGAATTACGTATGCGAGCAGTGTGGCTGCGGTTTCGTCAATCGCCAAATGCACAGGAACCACGTCAGAAGCCACGAGACAGGCGCTTTCAAATGCAGCACTTGCTCCAAAGTGTTTGACACATTGCAGAAACGGAAATCTCATGAAAAGCAAGTTCACACCACAGCGAAGATGTACAGATGCGGTTATTGTAATGAGAAATTCAGATACTATGTACACAAGGTCAAGCATTTGAAGGAAACGCACGGTATACTACCAGACAGGAGGAAATGTAAAGGTTGTGATAAAGAATTCAACAGTCCGGCAGCGTTAAGGACTCATGAGAAACGTGATCATCTTGCTGAGAGGCCGTATATATGTACGCAATGCCGCATGTCCTTTTTCCGGAAAAGTGGTTTGGAAGAACACTTAGTAAAACACACCGGCACAAAGGACTTTACGTGCAAAATGTGCAGTGTCGCACGAGGAACTAGGATTATCACAATCGATGCTACTCAAAAAGGGGCGCTTGTCCCAAGCAGACCGAACCTCTTGAGAGTGCCACGGCCACCATCGGGTCGTACTTACCAAAACTCGAAGAAGAACCAACATAACCTGGCGCAGATCTTACTTTACTCCAACGCAACGCCCATTCGATGGTTCGACCAACGTGGATACATTTGCGCATTCTGTCCCGCTCCATTCCCTGAGCCTCGCGCGCTTAAGAAACACTTTCTGAATGAGCACAACAACGACAGACTGATCAGGCTCATGTCGGGCAGGTTGCTCAATCATGTCATCAAGCTAGACGTCACTTTTTTGAACTGCGCCTTGTGCGACACCGATTTCGCCGAGCTCGATGCTTTCATGTCTCATTTGATAGCGGCTCACGGCAAGGATTTGTACATGGATGTTAAGAGCCAGATACTACCGTTCAAATTTGACACTGCGGAGTTGTCTTGCGCGATCTGTTCATCCGAGTACGCTAGCTTCAAGCTACTGCAACAGCACATGAACGTCCACTTTAGAAATTACATCTGTAGCATTTGTAATGCTGGGTTTGTGATTGAGCGCCTACTCCGGAGTCATCTAACGAGGCATGGCGATGGGGAGTATAAGTGTGACGTTTGCAGTAAATCTTTTATAAACGAGGTGAAAAGACGTGAGCACGAGCGACGTTCTCATATGGGATTTAAGAAGAGGAATAAATGTCGGTTCTGTGGCGAAAGATTCATTGATTATAGGAAGAAAATAACTCATTTAGTGAAGGTGCACGGGGCGACTCCGATTGTCTTTAAATGCCAGGCGTGTGAGCGCACTTTCGACAACCAACGCGCCCTGTCGCGGCACACCAGGAAAGATCATCTGCTGGAACGAAAACACCAATGCAATTATTGCGATATGAGGTTTTTCAGCAGTACCCGGTTGCAGAATCACTTGCCGAAACACACTGGTATAAAAAAATTCCAATGCGACGTCTGTTCCAAGGCTTTTGGTAGAAAGAATACTCTCAAGGAGCATATGCGAATTCATACCGGTGATAAGAGGTTCTCATGCTCGTACTGCGGACAGGCGTTCATACAGAAGTGCAGTCTGAAGGGCCATCTACGCTCTAAACATGGCGAAATTCTTGATGTCTAG
- Protein Sequence
- MPIVVKTESVQEIKDVKSEDKNARVKKVKPKASPNVKVVNINKINVKVKETKQRKPSEIQKHRNNIRVILECTNATPIRCCGDIGYQCCFCIDQYPSPADLKKHTIQEHRRDLKTKHDFTWEKTMTAFLVKLDITALRCDLCGADIDSLEILTTHLIENHGETLYTDIKSHVLPFKFKDETLRCTFCANVYNSFKVLQEHMIGHYTNYVCEQCGCGFVNRQMHRNHVRSHETGAFKCSTCSKVFDTLQKRKSHEKQVHTTAKMYRCGYCNEKFRYYVHKVKHLKETHGILPDRRKCKGCDKEFNSPAALRTHEKRDHLAERPYICTQCRMSFFRKSGLEEHLVKHTGTKDFTCKMCSVARGTRIITIDATQKGALVPSRPNLLRVPRPPSGRTYQNSKKNQHNLAQILLYSNATPIRWFDQRGYICAFCPAPFPEPRALKKHFLNEHNNDRLIRLMSGRLLNHVIKLDVTFLNCALCDTDFAELDAFMSHLIAAHGKDLYMDVKSQILPFKFDTAELSCAICSSEYASFKLLQQHMNVHFRNYICSICNAGFVIERLLRSHLTRHGDGEYKCDVCSKSFINEVKRREHERRSHMGFKKRNKCRFCGERFIDYRKKITHLVKVHGATPIVFKCQACERTFDNQRALSRHTRKDHLLERKHQCNYCDMRFFSSTRLQNHLPKHTGIKKFQCDVCSKAFGRKNTLKEHMRIHTGDKRFSCSYCGQAFIQKCSLKGHLRSKHGEILDV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -