Phep026562.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Pandemis heparana
Gene Symbol
-
Assembly
GCA_963854515.1
Location
OY978034.1:6523287-6544407[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.034 2.3 9.6 3.8 2 23 74 95 73 95 0.95
2 16 2 1.3e+02 4.0 2.7 1 23 107 131 107 132 0.92
3 16 0.00014 0.0092 17.1 0.4 2 23 138 161 137 161 0.97
4 16 0.035 2.3 9.5 0.2 1 23 167 189 167 189 0.93
5 16 0.0021 0.14 13.4 3.3 1 23 195 217 195 217 0.98
6 16 0.034 2.3 9.6 0.2 1 23 493 515 493 515 0.98
7 16 2 1.3e+02 4.0 7.2 1 23 522 544 522 544 0.95
8 16 0.0013 0.088 14.0 1.8 1 23 584 607 584 607 0.95
9 16 0.00056 0.037 15.2 1.8 1 23 614 637 614 637 0.98
10 16 0.013 0.86 10.9 0.2 2 23 659 681 658 681 0.96
11 16 0.016 1.1 10.6 0.4 1 23 692 714 692 714 0.97
12 16 0.024 1.6 10.0 2.1 3 23 720 741 719 741 0.95
13 16 7e-06 0.00046 21.2 1.8 1 23 747 769 747 769 0.98
14 16 0.00015 0.0096 17.0 0.2 1 23 775 797 775 797 0.96
15 16 0.00012 0.0077 17.3 0.1 1 23 803 825 803 825 0.97
16 16 0.00065 0.043 15.0 2.4 3 23 833 854 833 854 0.97

Sequence Information

Coding Sequence
ATGATAGATGTGTCAACTCACAAGTGCCGGAAGCGCGGGCGCAAACGGAAATGCCTGAATAAGGACGAAACTGTCATCTGCGTGCCCACACAGGAGGACTTCTTGAAGaGAGCCCAAGGCAGACCCAGAAATAGCACAGATGATAACATTAATGGTTTACTTGTTGAGAAGGCCCGCAAGAAGAAACCATCGGAGCTGACCTCAGATCCGCAGATAGTGACTTGCCACAACTGCAATGAGTCCTTCACGTCTAAAGTTCGACTGAAGTTCCATATGCAATTCCATGAGAACACGTCAATGCGTACGCCGTCAGGCCAGTTCACGTGTAACGAGTGCAAAGGCGAGGAGTTCGCCACGGAGACGGAGCTGTTCGACCATCTCCACTTCAGACACCATAAGCAGCGGCGTTGGCAGTGCCCGGTCCAGGGTTGCGGGAAGACGTTCTTCCTCAGAGCGACACTGACGAAACACAGTCGCACGCACACAGACACGCGGCGGTATGTGTGCGGGACTTGCGGCAAGAGGTTTCTCGACAAACAGACGCTGGACGAACATGGCGTCACACATTTACAGATCAAGCCGTTCCAATGCCATATATGCCTGAAGCAACTCACGCGCCGGTCGCGGCTGCGCATGCATCTGCGCGCGCACGAAGAGGCGCTCTGTCCCGCTCTGGTGCCTGTCTGCGCAGCTTGCCGTCGCGCCTTCGCCGACGTGGCCCAGGCGCAGGAGCATGTGACGAAATCTGTGGAATGTATCGAGATTTTTGCTCGAGAGATGAAGGAGGAGGCCGAAGAGCCGGCAGCCGTGCTCTCGCCCACTAGTGGACTCGTGCGACCCAGCACCCGGAAACCTGagagcgcgcgcgccgggctGGTCCCGTGCGAGGCggcctgcgcgggcgccgccgcgctgctggccccgCCCAGCGCGTGTAGAGTGGTTGTTGTGTGCAgagagcgcgcgcgccgggctGGTCCCGTGCGAGGCggcctgcgcgggcgccgccgcgctgctggccccgCCCAGCGCagagcgcgcgcgccgggctGGTCCCGTGCGAGGCggcctgcgcgggcgccgccgcgctgctggccccgCCCAGCGCGTGTAGAGTGGTTGTTGTGTGCAgagagcgcgcgcgccgggctGGTCCCGTGCGAGGCggcctgcgcgggcgccgccgcgctgctggccccgCCCAGCGCGTGTAGAGTGGTTGTTGTGTGCAgagagcgcgcgcgccgggctGGTCCCagagcgcgcgcgccgggctGGTCCCGTGCGAGGCggcctgcgcgggcgccgccgcgctgctggccccgCCCAGCGCGTGTAGAGTGGTTGTTGTGTGCAgagagcgcgcgcgccgggctGGTCCCGTGCGAGGCggcctgcgcgggcgccgccgcgctgctggccccgCTGCCTCGCGCGCTGCGCTACGCGGTGCGCGTCGTGCAGGTCGAGAAGGCCTTCCGCTGCGAGTACTGCGAGGACGTGTTCTACCTAGAAGATGCGTTGAACAGCCATCGCCTCATCCACAAAGGGGTCAAGAACCCCTTCACCTGCCACATCTGCAAAGTCAGCTTCGCTACTTACTCCAGATGTACCACACACAAAACCACCCACGGCTTCTACAAGCGCTCCCTCGCCGACGCCAAGAAACAGGACAAGCCGCTCAAGGAGGAAGCTGGGCCCTCTGCCAACGGGATCCTGGGCTACGGAGGGTTCCCCGTCGTTAAACATTTCCTATGCGAGGACTGCGGGCGGTCATACTTGCACTGGACGTATCTGCAAGTGCATAGGCGCATGAAACATGCCAACGAGAATTTTATCTACAAATGCAACCACTGCGATCTGACGTTCCCGAACAGTTGGAGTGTGGCGTATCACAGGAAGAAGGTCCATGGCAAAACGGGGCTGGACGAAGGCAACGGTGCCACCAAAATGGCTAAAGACGATTACAGAATCCCTTGCCGCGACTGCGAGGAAGTGTTGCCAAACAAAACTGCGCTCTATAAACACAGGAAAAAGGAACACAGTGACCTGTCACTACGAATTaacaGCGTGCACGTGTGCCGCGTGTGCGGCAAGCGCTACCTGTCGCGCGCGGGCCTGGACGCGCACGCGCGCACGCACGCCGCGCGCTCGGCCTGCGCGCACTGCGGGGACAGCTTCGCGCACGCGCACAAGCTGCAAGAGCACCTCAAAGAGGTGCATGGTCACGAACTAGACTTCCACTGCAACGTGTGCGAGAAGCGTTTCACGACGCGCGGCTCCCTGTCCGCGCACATTCTGACGCACGCGGCGCACAGGCCGCACGCGTGCGCGGTGTGCGGCCACGCGTTCCGCACGCCCGCCATGCTGGCCGACCATGCGCGCACGCACACCGACGAACGCCCGTTTCCTTGCGACGTATGCGGCGTAGCTTTTAGAAGGTCGACGGCGATGCGCAACCACCGGCTGATCCACTCGGGCGTGCGCGCGTGgggctgcgcgcgctgccccAAGCGCTTCCGCGTGCGCTCCGACCTCAACACGCACCGCCGGCGCAAACACCCCGCGCAGCTGCACGTCATACAGATAGAGGGTCTCAATCCGGGGCCGGAGCAAGTGATGGAGTGTCTCACTGCGAACAGCATCCCGCATGAGAATGTTGTCGAAATCACAAAGATCTCCTTTGCTAAGGGTGCTTCGAGCGTGGTACCCGACAGTGCTCGCGCGCTGTCGCTAGTAGCAGCGCCGCGCGCTCCCGTGGCCTGGGGCCGCCCGCTCGTCAGCAACGTGTCGTGGGGcgacggcgcggcgcggcgcgggcggggcgGGGGGCGTGTGCGCCGGCCCGCTATACTGCAGCGCGGCGCCTACCCCGACAACAACGAGGAGCTGACCGAACTGAACGTGCAGATGTTGCTGCGCGATAGCGTTCTGGATCGCCAGGGGGCGCTGCCTATGGACGACTCGCTGCTGCTTGAATAG
Protein Sequence
MIDVSTHKCRKRGRKRKCLNKDETVICVPTQEDFLKRAQGRPRNSTDDNINGLLVEKARKKKPSELTSDPQIVTCHNCNESFTSKVRLKFHMQFHENTSMRTPSGQFTCNECKGEEFATETELFDHLHFRHHKQRRWQCPVQGCGKTFFLRATLTKHSRTHTDTRRYVCGTCGKRFLDKQTLDEHGVTHLQIKPFQCHICLKQLTRRSRLRMHLRAHEEALCPALVPVCAACRRAFADVAQAQEHVTKSVECIEIFAREMKEEAEEPAAVLSPTSGLVRPSTRKPESARAGLVPCEAACAGAAALLAPPSACRVVVVCRERARRAGPVRGGLRGRRRAAGPAQRRARAPGWSRARRPARAPPRCWPRPARVEWLLCAESARAGLVPCEAACAGAAALLAPPSACRVVVVCRERARRAGPRARAPGWSRARRPARAPPRCWPRPARVEWLLCAESARAGLVPCEAACAGAAALLAPLPRALRYAVRVVQVEKAFRCEYCEDVFYLEDALNSHRLIHKGVKNPFTCHICKVSFATYSRCTTHKTTHGFYKRSLADAKKQDKPLKEEAGPSANGILGYGGFPVVKHFLCEDCGRSYLHWTYLQVHRRMKHANENFIYKCNHCDLTFPNSWSVAYHRKKVHGKTGLDEGNGATKMAKDDYRIPCRDCEEVLPNKTALYKHRKKEHSDLSLRINSVHVCRVCGKRYLSRAGLDAHARTHAARSACAHCGDSFAHAHKLQEHLKEVHGHELDFHCNVCEKRFTTRGSLSAHILTHAAHRPHACAVCGHAFRTPAMLADHARTHTDERPFPCDVCGVAFRRSTAMRNHRLIHSGVRAWGCARCPKRFRVRSDLNTHRRRKHPAQLHVIQIEGLNPGPEQVMECLTANSIPHENVVEITKISFAKGASSVVPDSARALSLVAAPRAPVAWGRPLVSNVSWGDGAARRGRGGGRVRRPAILQRGAYPDNNEELTELNVQMLLRDSVLDRQGALPMDDSLLLE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-