Phep024695.1
Basic Information
- Insect
- Pandemis heparana
- Gene Symbol
- -
- Assembly
- GCA_963854515.1
- Location
- OY978032.1:2909707-2927049[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.044 2.9 9.2 1.6 1 23 256 279 256 279 0.95 2 18 3.1 2.1e+02 3.4 0.2 2 23 304 326 303 326 0.88 3 18 0.2 13 7.2 5.6 1 23 345 367 345 367 0.98 4 18 0.0017 0.11 13.7 3.1 2 23 372 393 371 393 0.96 5 18 0.0008 0.053 14.7 0.1 1 23 398 421 398 421 0.96 6 18 2.8 1.8e+02 3.6 2.6 2 23 427 449 426 449 0.93 7 18 0.0017 0.11 13.7 1.4 1 23 455 478 455 478 0.97 8 18 2.6e-05 0.0017 19.4 1.5 2 23 484 505 483 505 0.97 9 18 0.0012 0.079 14.2 1.7 1 23 511 533 511 533 0.97 10 18 0.0036 0.24 12.6 0.1 3 23 583 604 581 604 0.90 11 18 2.3e-05 0.0015 19.6 3.5 1 23 630 652 630 652 0.98 12 18 0.52 34 5.9 6.5 1 23 656 678 656 678 0.96 13 18 0.0023 0.15 13.3 1.1 2 23 684 706 683 706 0.96 14 18 0.0092 0.61 11.4 0.2 1 23 711 734 711 734 0.87 15 18 0.00086 0.057 14.6 0.2 1 23 741 764 741 764 0.96 16 18 1.2e-05 0.00078 20.5 0.5 1 23 770 792 770 792 0.97 17 18 0.019 1.3 10.4 3.6 1 23 798 820 798 820 0.98 18 18 0.00017 0.011 16.9 1.8 1 23 826 848 826 849 0.95
Sequence Information
- Coding Sequence
- ATGGATGTGGAGAATTTAAACAGCTGGGTATCTCAACCAGACGTGTGTCGGTGCTGTCTGTCGGCGAGCGGATGTTGGGACCTCACAGCAGCTTACATCTCTGAGGCAGGCTTGAAGGAGGTATTTGCTGACATCTTACAAGAATCTTATGGGATATccCTGTCCCACCTCTCGGAATGGGGCCCGAGCAGGCTGGTGTGCGGGCTGTGCGTGGGGCACCTGCGAGGGGCCTCCAGCTTCAAGGAACAGGTGCTACGGGCCGAGAAACACTTCGCCAACTATTATGACAGAAAGAAAGATAGTATTGAGGAGTTAGAAATCAAGACTGAGCCAGAAGTGGAGTGCGGGAGCCCTGGTGGTTATGCAGACGAGTTTGAAGCTTGCAACAGAGaaAACCATCATCCGTCACCTAAATTAGAGGCGAAAGCGAAGAATCGACTGAAATTAACCAAAACTCTCAAAAGAAAGAGACACAAACACTTGAAAGTTAAAGGGAAGACAAAGAAGGAAGATTCAGACGGCGACTCAGATACGCCTATATCGGAATTGGCAAAAATAAACGAAACAACAACCGATGTTGATGTTCGTGGAAATATAGACCTGCCTAAACTGGGCAATGACAAATTGGATATATCTAAAACAGGCAGTCAGCCTGGCAGGGTAAACGCAAGCAAGCAAATATCAGAACGCAAACGCGTCATTCTAACTTGTGGCATAGTCCTCCGCGACACCACAGCCTGCCCCTTCCGTCACCACAAAAGCTGGTTCCAATGTTTCTTCTGCCAGCAAGACTTCATGCAACTAAACGCACTAAGGAACCACACGAACGAAACACACTCTGACACCGATGCGGAATTAAAAAGAATAAAACGCTATCCGCGCTCCCTGCAAATTGACATTTCGAATTTGGAATGCCGCCGCTGTCAGTTGAGTTTGACAGATGTCGACGCGATGCGCCGCCATTTTGGCAGCGTTCACGATAAGGTCATTTATAGTGAGTGCATCGCCGATTACAAAGTCGATTCGAGTCCTTACACGTGTCATTTGTGTAAGCAAGAGTTTCACGTGTTCAGAACTTTGACTACGCATCTGAACGAGCATTACGCGAATTGCATATGCGATGTTTGTGGTAAATCTTTTTTGAACTCGAAACGGTTGAAAGTTCACAAACGTACTCACGAAAGTGGCAACTTTCCGTGCGGCGAGTGCGGGAAGGTGCTCAAAACGAAAACTTCGAAAGCTAACCACATGGAAAGCGTTCACTCGAAACGTGTACTCAAATGCCACATCTGTTTGAAACCCATGAAACACTACAACGACCGAATAAAACACATGTCCGAAGCGCACAACATTACGCACAAGTTTAAGTGTCCAATGTGCGCTCGGGTGTACAATATTAAGCATTATCTGGCGACGCATATCAGGCAGACGCACGgccataagaataagaaatgtGTTGAGTGTGGGATGGCCTTTATAACCAATCATGGGTTGAAAAAGCATATGTTGAAACATAGTGGTGAGAAACCGTTTATTTGCACGGTTTGTTGTAAAGCATATGCGCGGAGTTACACGCTAAGGGAGCATATGCGGGGGCATGAGGGGGACCGGAGATTTGTTTGCCCTGATTTAGAGCAACTAAAAACACATTTAAGCGACAAACATAGTGATGTAACAGAAAAAGAAATATCTCGAAGCTTGAAAACTCCCAAGAACTTGATAAAAGCCGACGTCAGTGACATAATATGCAGACTGTGCGGCAACACGTTTAAAACCATAGACAACTTGATACAACATTTAGTTTTGAATCACAACAAATTGTACCACGACACGCCCAAATTCAAGCCGTCCCACGGCATTCTGGGTTTCGATTTGGCATCAGAAAAATTTAAATGCCACGTTTGCGGGAAAGAATTtagatttttcaaaaatttaagcatacacatGAATGACCACAGCGCTAATTTCGTCTGCCATTTTTGCGGTAAAAAGTTCCTATCCGACCACAGACTGCACGCACACGTCAAAATGCACAAAGAAACTGATATAGAGTGCAAGTTTTGCGACAAAAAGTTTCGCACGACGTCCGCTAGGGCTTATCACGTTAGGAAGGTCCACAGTAAAGCTGTCTACGCGTGTCCAGAGTGCGATCAAGTGTTTTCGCAGTACCAGAAGCGGCTCCAGCATTTGGTGAACGAGCATAACCTCAAAAAACCGGAATACAAGTGTGACATTTGCTTCAAAAACTACGCGAGCTCGGGAGGTCTGAGCGCGCATGTACAATATTCGCATTTGAAGAACAAGGAGTACCCCTGCCAAATTTGCGGGAAGAATTTCGGCTACAAGTGGACTCTGAAAAAACATTTGACTGTGCATTCGGGAGCGAAGAATTTCGAGTGTAAATTTTGTTGTAAAAAGTTTGCTGAATTGTACACACTTAAAGTTCATTTGCGGATACATTTGAACGACAAACCGTATGCGTGTGCGGTGTGCAAGGCGGCGTTTGTGCAAAAGTGCAGTTTGAAAAACCATATTCGAGTTCACCATGCCGATTCCGGTATCGACTTGAAAATGTTGTAA
- Protein Sequence
- MDVENLNSWVSQPDVCRCCLSASGCWDLTAAYISEAGLKEVFADILQESYGISLSHLSEWGPSRLVCGLCVGHLRGASSFKEQVLRAEKHFANYYDRKKDSIEELEIKTEPEVECGSPGGYADEFEACNRENHHPSPKLEAKAKNRLKLTKTLKRKRHKHLKVKGKTKKEDSDGDSDTPISELAKINETTTDVDVRGNIDLPKLGNDKLDISKTGSQPGRVNASKQISERKRVILTCGIVLRDTTACPFRHHKSWFQCFFCQQDFMQLNALRNHTNETHSDTDAELKRIKRYPRSLQIDISNLECRRCQLSLTDVDAMRRHFGSVHDKVIYSECIADYKVDSSPYTCHLCKQEFHVFRTLTTHLNEHYANCICDVCGKSFLNSKRLKVHKRTHESGNFPCGECGKVLKTKTSKANHMESVHSKRVLKCHICLKPMKHYNDRIKHMSEAHNITHKFKCPMCARVYNIKHYLATHIRQTHGHKNKKCVECGMAFITNHGLKKHMLKHSGEKPFICTVCCKAYARSYTLREHMRGHEGDRRFVCPDLEQLKTHLSDKHSDVTEKEISRSLKTPKNLIKADVSDIICRLCGNTFKTIDNLIQHLVLNHNKLYHDTPKFKPSHGILGFDLASEKFKCHVCGKEFRFFKNLSIHMNDHSANFVCHFCGKKFLSDHRLHAHVKMHKETDIECKFCDKKFRTTSARAYHVRKVHSKAVYACPECDQVFSQYQKRLQHLVNEHNLKKPEYKCDICFKNYASSGGLSAHVQYSHLKNKEYPCQICGKNFGYKWTLKKHLTVHSGAKNFECKFCCKKFAELYTLKVHLRIHLNDKPYACAVCKAAFVQKCSLKNHIRVHHADSGIDLKML
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -