Phep025572.1
Basic Information
- Insect
- Pandemis heparana
- Gene Symbol
- -
- Assembly
- GCA_963854515.1
- Location
- OY978033.1:772770-807654[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.73 48 5.4 1.4 2 23 322 344 322 344 0.90 2 22 0.35 23 6.4 0.1 1 20 348 367 348 370 0.87 3 22 4.5e-05 0.003 18.7 3.5 1 23 375 398 375 398 0.97 4 22 0.025 1.6 10.0 0.2 3 23 408 429 407 429 0.94 5 22 1 68 4.9 0.0 2 20 438 456 437 458 0.92 6 22 0.031 2 9.7 0.0 3 23 471 491 470 491 0.95 7 22 8.5e-06 0.00056 20.9 0.3 1 23 496 519 496 519 0.97 8 22 0.28 18 6.7 0.1 1 17 543 559 543 560 0.89 9 22 2.3 1.5e+02 3.9 0.6 10 23 971 984 970 984 0.94 10 22 0.43 28 6.1 0.2 1 23 990 1013 990 1013 0.84 11 22 0.017 1.1 10.6 1.2 1 23 1019 1041 1019 1041 0.95 12 22 1.3e-05 0.00087 20.3 0.4 1 23 1047 1070 1047 1070 0.96 13 22 0.66 44 5.5 0.8 2 23 1318 1339 1317 1339 0.96 14 22 0.00041 0.027 15.6 3.0 2 23 1401 1423 1400 1423 0.96 15 22 0.012 0.78 11.0 0.2 2 23 1432 1454 1432 1454 0.91 16 22 0.1 6.8 8.1 0.1 2 19 1463 1480 1462 1482 0.94 17 22 0.026 1.7 10.0 4.7 3 23 1494 1515 1493 1515 0.96 18 22 7.6e-05 0.005 17.9 1.0 1 23 1520 1543 1520 1543 0.97 19 22 0.015 1 10.7 2.2 1 23 1569 1591 1569 1591 0.98 20 22 7.4e-05 0.0049 18.0 0.6 1 23 1597 1620 1597 1620 0.95 21 22 0.0013 0.083 14.1 0.9 1 23 1626 1648 1626 1648 0.98 22 22 1.1e-05 0.0007 20.6 0.5 1 23 1654 1677 1654 1677 0.96
Sequence Information
- Coding Sequence
- ATGGCATCTGTTAAGCTAGAATTTGGGTCAGAGGAGCTGCTGGCTTGCCGAATATGTTTAGCTACAGACACTAAGTTGTATGGTATTCACGAACACCGCTTGGATGAGATTTATGCTGAAGTTTTAGGTACAACGCTGTCGGTGTGGGACGGGCTGCCGCAGCACGTGTGCAGCTTCTGCCGCGCGCTGCTGCTGAAGGGCCTGCGGCTGCGGCAGCGCTGCCGGACTGCCGAGACGCTGCTCAGGCAGTCCCTGCACACACACTTTataaccaCAGACTACATCCGAACCATAGATAGGATCTCAAACAAGCTATCCCTCCGACTTACAGTGACCAACGTTGAGAGAGACCCCAAAGATGACACAAGCAACAAAGTTGACACAGATGAAAAAATTGACACATTTGACAAACTTGACACATTTAACAAAAATGACACTTACGACACAATCGACACTGATAAACTCGATATTGACAGCGACAACGACTCACAGCTGATATCGGTACTTTGCGAACCTGAAATTTATGTCAACGATGTCAAATTCGCCGAAGTCATTGCGACCGGTATTGACATAAAATGTGAGCCTATGACGCTAAGGAAAAGGACGAaaagtgtcaaaagtgtcaaaaaggTCAAAAGCAAAAAAGACGGTAAAAGAAAAAAGGTAGAAAGCAAAAGAattaagaaagaagaagaaatagaCAGCAAGAAATACACGAGAAAAAAGAAAGGCTTCAAATGGTACTTTAGTACTGAAGAAGATTATGTCAAGTTTgagaataaatataatattagagTGGTGAAGTTGAACGAAGAGGAGCAAAGGAGAGAGATGGAGTGTCGGAGGGAGACGGAGAACTATAGACACGCGCATGTGCGCTGCGAGAAGTGTTGCAAAGGCTTCTTATCCATGATCACTTTTGAGAATCACAATAAGATCCATGACCCGAGCACTGGTGCGAACGAGTGCGCGCTATGTTTCTCTCGCTACAAATTCCCGACGCACCTCCGCCAGCACATGGTGGAGAGCCACTCGCACAAGTACATCTGCAAGATCTGCGACCAAGTCATAAGGAGGCGGAGTGCGGCCATGTTGCACTCGGCGTTCCACGCCGGCCGGACTTTCGAGTGCAAGTACTGCGGCAGGACcttcaaGAAGTCGTCGACCCGCTACACGCACATGCGCATCCAGCACGCGGGCGAGAACGCGTCCGGCGGCGCATGCGACGTCTGCGGAGAGACCTTCACTGGCGCCCTGGGGCTGCAGCAGCACAAGACCAGGAAACACAACAAAcCAGCGGTTCCGGAGCTGAAGTGTGACAGCTGCGGCGTGCAGTTCGAGAGCTTGGACGCCGTGGCCAGACACACCGACAGGACCGCCGACAACGTATGCGACCCCACACTCAGCGCGTGCGAGCAGTGCGGGGAGGCGTTCGCTAGCGAGCAGCAGCTGGCGGGGCACCGGCTGGCGCACGCGCAGACGACGTACAAATGCGACGACTGCAACCAGCCCTTTGCCACTAAGTCCTCGCTCAGCACGCACATAGACCGCGTACATCTGAAGATAAAGCCGCGGTATAAACTGATATACAAATACAGTGCGGCGCGCAGGTCCAAGCTGGATGAGTACATGTGCGAAACCTGCGGGAAGGGGTATACGGAAAGGTCTCGACTGATGAAATCTACGCTCCGCCCGGAACCTGCTCAGCTCCAAAACCCCGAGAGCTTTCAGCTCGAACTTCAAAACCGTTTCGAATGCCTAGGTAGCGACGTCGACGAATACAACGACGGGTTTGTGGAAGCTGTCCATACGGTCGGGTCTAAGTTCTTCAAGACCCGCCGTAATACAACCAAAAAGATCTCGGACTCCACCCTTGGGCTCATGGAGATGAGACGTGAGATGATTCTGCAGTCCTCTGGTGACGCTTCTCGCTATCGGCAGCTCAACAGGCAGATCTCAAAGTCTTTGAAGCGCGATGTACGCCGATTTAACACCAATAGTATTGAAGAGGCTATTGAGCGTAACAGGGGCTCTAAGGTGTTTACCAGGAATCTGTCTGTTGGTCAAAGCCGATTAATGAAGTTGAGGACCGACGACGGCAGAATCATTTCATCCAAACCCGAGCTGTTGGAGGAAGTTGAGAGGTTTTATGGACAGTTATACGCGACAACCCGAACACCCGTCGAAAATCTAGCTAAAGACCCGAGGGCTAGATTAACCCGACACTATACCGAAGACATCCCGGACGTCAGCCTGTACGAGATTAGTATGGCCCTCAAACAGCTTAAGAATGGCAAAGCCCCGGGTGCCGACGGAATTACAGCCGAACTCCTGAAGGCAGGTGGTAAACCAGTCCTTAAGGGCCTTCAGACGCTGTTTAGTTCCGTCCTCCACCAAGGGAGAACGCCGAAAGCATGGAACAGAAGTGTGGTGGTGCTCTTCTTCAAAAAAGGTGATAACACCTTGCTCAAGAACTATAGACCCATCTCACTTCTGAGCCATGTTTACAAGCTGTTTTCCAGGGTCATCACAAATCGCCTCGCACGCAGGTTCGATGACTTTCAGCCTCCCGAACAAGCCGGCTTCCGAAAGAGCTATAGTACCGTAGACCACATACATGCGTTGCGGCAGGttatacagaagaccgaagagtataaCCGCCCCCTTTGCCTTGCATTTGTGGACTACGAGAAAGCCTTTGATTCGATCGAGACTTGGGCTGTGCTGCAGGCTCTCCAGCGGTGCCAAGTTGACTACCGGTATATCGAAGTGTTGAAGTGTCTGTACGAAAACGCCACTATGTCCGTCCGATTACAGGACCAGAGCACGAAGCCTATTCCTCTGCGGCGGGGAGTCAGACAGGGAGATGTGATCTCTCCGAAACTGTTCATCGCCGCATTGGAGGATGCTTTTAAGAGCTTTGCGAACCTGAAGACGCATCAGTTGCGGCACACGGGCGAGCGGCCGTTCAAGTGCGCGCAATGCCCTAAGAGCTTCCTCACCGCCGCGCAGGCCAAGGGTCACAAAGAGCGCGTGCACGCAGGCGTAAAGAAGTACCAGTGCTCGCAGTGCCCCAAGACGTTCCTGGACAAGAGCTCCATCTACAAGCACAAAGTGGTACATACAGGCGAGAAGCCTTACGAATGTCAGATCTGCAACAAGGCGTTTACCCAGTCGGGCTCGCTGTCCACGCACGTCAAGTACGTCCACATGAAGTTGTCTGCGGGCGACGGGCTCCCGCAGCACCTGTGCGCGGCGTGCCGGGCGGCGCTGCAGCAGGGCCGGGCGCTGCGcacgcgctgccgccgcgcgcACCACCTGCTCGCCAAGTCGCTGGCGCAGCACCACTACATCACAACGGACACTATTCGCTCGTTGGACCGCACAGCCCTAGCTGAAGACAAAACAGACATCACAGACAATCCAGACATCCCAGACATCTACCCGAAGAACCTAGACTACCTCGATCACTCCAACGACAGCTCCCAGCTACTATCCACCCTCTGTCAACCCGACAGTGATGTGGAAATGACAGATGTCAAAGACCCGAACTATATCGACATACCAGTGGTGGAAATGGATGATCTGGATGACATGGATGAGATTGATGAGAAGTTGTCGGAGTTGAAAGCGAAGTTGGAGAGTAAGATTAAGAAGGAGAAGGGATCGAGGAGGAAGAGGGTGAAGAAAGAGAAGGTTAGGAAGAGGAGGAGAGAGGTGGAAGATGTTAAAGAAGTTAAGgAGGAAAAGCCTTCAGTGGAGTGGGTGGCGAAAAAGAAGACGCCTtacaaaagaaagaagaagggATTCAAAAGATATTTCATGTGCGACGAAGATTACGCCAAGTTCGAAGAGAGATACAATATAGAGGTAGTGAGACTGTCGGAGGAGGAGCAACAGAGAGAGATGGAGGCGCGCAAGGAGTCCGAGAACTACCTGCACGCCCTCGTGCGCTGCGAGAAGTGCTTCAAGGGCTTCCTCTCCATGTTCACATACGAAAACCACATCAAGGTCCACGACCCGGCGCTGGGCCCGAACGAGTGCCACTTCTGCTTCTGCCGCTTCAAGTGGCCCAACAAGCTGCGCACGCACCTCATCGAGTGCCACCAGCTCAAGTACGTCTGCAAGGAGTGCAAGCTCGTCATTCGTGGCAGGTACATGGCGGTGATGCACGCGCAGTTCCACGCAGGCAAGACGTGGGAGTGCAAACATTGCCCGCTAACCTTCAAGAAGCAGTCGACGTTCTACACGCACCTGCGCATCAACCACTCGACGGAGAACGCGCTCGGCGGCACCTGCGATATCTGCGGGGAGACCTTCACCGGCGCCATGGGGCTGCGCATGCACAAGACGCAGACGCACAACAAGAAAGAAATAAAGGCGTTAAAATGTCTGATATGCAAGATACAGTTTGAGAACAAGGACGCGTTGGACCGACACTTCCTGCCAAACAACGACTGCGATCCCAAACTCAGATTTTGCGAGACGTGCGGGTGCTCGTTCTGCGACGAGGACCAGCTCAGCCTGCACCGGCAGCGCCAGCACGGCGTCGAAGTCTACAAGTGCGACGACTGCAACAAATCGTTCCTATCAAAGTCTTCTCTGTCGACGCATATTGACCGCGTACACCTGAACATCAAGCCGCGGTTCCGCTTCTACAACTACAAGAAGACGAACAGACAGCGCGCCGGCGCACGGCTCGACTACATGTGCGAAACCTGCGGGAAGGCCTACACGtgcTTCGCGCTGCTGAAGACGCACCAAATGAGCCACACGGGGGAGCGCCCGTTCAAGTGTGCGCAGTGCCCCAAGAGCTTCATCACCGCCTCGCAGCTCAAGGGCCACCGCGACAGCTTCCACGCGCGCATGCGCAAGTACCGCTGCCCGCTCTGCCCCAAGACCTTCCTGCGCCAGTCCTCCATCTACAAGCACCGCCTAATCCACACTGGCGAGAAGCCCTACGAGTGCTCCATCTGCAGCAAGGCGTTTACGCAGTCGGGCTCGCTCACCACGCACGTCAAGTACGTCCACATGAAGTTGAAGCCGccgccgcggcgccggcgcaagCCCGAAGACCACTATTAA
- Protein Sequence
- MASVKLEFGSEELLACRICLATDTKLYGIHEHRLDEIYAEVLGTTLSVWDGLPQHVCSFCRALLLKGLRLRQRCRTAETLLRQSLHTHFITTDYIRTIDRISNKLSLRLTVTNVERDPKDDTSNKVDTDEKIDTFDKLDTFNKNDTYDTIDTDKLDIDSDNDSQLISVLCEPEIYVNDVKFAEVIATGIDIKCEPMTLRKRTKSVKSVKKVKSKKDGKRKKVESKRIKKEEEIDSKKYTRKKKGFKWYFSTEEDYVKFENKYNIRVVKLNEEEQRREMECRRETENYRHAHVRCEKCCKGFLSMITFENHNKIHDPSTGANECALCFSRYKFPTHLRQHMVESHSHKYICKICDQVIRRRSAAMLHSAFHAGRTFECKYCGRTFKKSSTRYTHMRIQHAGENASGGACDVCGETFTGALGLQQHKTRKHNKPAVPELKCDSCGVQFESLDAVARHTDRTADNVCDPTLSACEQCGEAFASEQQLAGHRLAHAQTTYKCDDCNQPFATKSSLSTHIDRVHLKIKPRYKLIYKYSAARRSKLDEYMCETCGKGYTERSRLMKSTLRPEPAQLQNPESFQLELQNRFECLGSDVDEYNDGFVEAVHTVGSKFFKTRRNTTKKISDSTLGLMEMRREMILQSSGDASRYRQLNRQISKSLKRDVRRFNTNSIEEAIERNRGSKVFTRNLSVGQSRLMKLRTDDGRIISSKPELLEEVERFYGQLYATTRTPVENLAKDPRARLTRHYTEDIPDVSLYEISMALKQLKNGKAPGADGITAELLKAGGKPVLKGLQTLFSSVLHQGRTPKAWNRSVVVLFFKKGDNTLLKNYRPISLLSHVYKLFSRVITNRLARRFDDFQPPEQAGFRKSYSTVDHIHALRQVIQKTEEYNRPLCLAFVDYEKAFDSIETWAVLQALQRCQVDYRYIEVLKCLYENATMSVRLQDQSTKPIPLRRGVRQGDVISPKLFIAALEDAFKSFANLKTHQLRHTGERPFKCAQCPKSFLTAAQAKGHKERVHAGVKKYQCSQCPKTFLDKSSIYKHKVVHTGEKPYECQICNKAFTQSGSLSTHVKYVHMKLSAGDGLPQHLCAACRAALQQGRALRTRCRRAHHLLAKSLAQHHYITTDTIRSLDRTALAEDKTDITDNPDIPDIYPKNLDYLDHSNDSSQLLSTLCQPDSDVEMTDVKDPNYIDIPVVEMDDLDDMDEIDEKLSELKAKLESKIKKEKGSRRKRVKKEKVRKRRREVEDVKEVKEEKPSVEWVAKKKTPYKRKKKGFKRYFMCDEDYAKFEERYNIEVVRLSEEEQQREMEARKESENYLHALVRCEKCFKGFLSMFTYENHIKVHDPALGPNECHFCFCRFKWPNKLRTHLIECHQLKYVCKECKLVIRGRYMAVMHAQFHAGKTWECKHCPLTFKKQSTFYTHLRINHSTENALGGTCDICGETFTGAMGLRMHKTQTHNKKEIKALKCLICKIQFENKDALDRHFLPNNDCDPKLRFCETCGCSFCDEDQLSLHRQRQHGVEVYKCDDCNKSFLSKSSLSTHIDRVHLNIKPRFRFYNYKKTNRQRAGARLDYMCETCGKAYTCFALLKTHQMSHTGERPFKCAQCPKSFITASQLKGHRDSFHARMRKYRCPLCPKTFLRQSSIYKHRLIHTGEKPYECSICSKAFTQSGSLTTHVKYVHMKLKPPPRRRRKPEDHY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -