Basic Information

Insect: Pandemis heparana
Gene Symbol: -
Assembly: GCA_963854515.1
Location: OY978019.1:11774825-11783152[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 6.4e-05 0.0043 18.2 1.3 1 23 137 159 137 159 0.98

2 13 1.9e-05 0.0013 19.8 4.8 1 23 165 187 165 187 0.98

3 13 0.071 4.7 8.6 5.7 1 23 192 214 192 214 0.95

4 13 3.2e-05 0.0021 19.1 1.6 1 23 232 254 232 254 0.99

5 13 0.0008 0.053 14.7 4.0 2 20 262 280 261 283 0.93

6 13 0.023 1.5 10.1 0.8 1 23 289 311 289 311 0.91

7 13 1.7e-06 0.00011 23.1 1.5 1 23 317 339 317 339 0.97

8 13 5.9e-07 3.9e-05 24.6 0.6 1 23 345 367 345 367 0.96

9 13 4.2e-05 0.0028 18.7 0.4 1 23 373 395 373 395 0.96

10 13 0.00027 0.018 16.2 1.2 1 23 401 423 401 423 0.95

11 13 5.7e-05 0.0038 18.3 3.4 1 23 429 451 429 451 0.98

12 13 4.9e-06 0.00032 21.7 1.4 1 23 457 479 457 479 0.99

13 13 0.0031 0.2 12.9 1.3 1 23 485 507 485 507 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	6.4e-05	0.0043	18.2	1.3	1	23	137	159	137	159	0.98
2	13	1.9e-05	0.0013	19.8	4.8	1	23	165	187	165	187	0.98
3	13	0.071	4.7	8.6	5.7	1	23	192	214	192	214	0.95
4	13	3.2e-05	0.0021	19.1	1.6	1	23	232	254	232	254	0.99
5	13	0.0008	0.053	14.7	4.0	2	20	262	280	261	283	0.93
6	13	0.023	1.5	10.1	0.8	1	23	289	311	289	311	0.91
7	13	1.7e-06	0.00011	23.1	1.5	1	23	317	339	317	339	0.97
8	13	5.9e-07	3.9e-05	24.6	0.6	1	23	345	367	345	367	0.96
9	13	4.2e-05	0.0028	18.7	0.4	1	23	373	395	373	395	0.96
10	13	0.00027	0.018	16.2	1.2	1	23	401	423	401	423	0.95
11	13	5.7e-05	0.0038	18.3	3.4	1	23	429	451	429	451	0.98
12	13	4.9e-06	0.00032	21.7	1.4	1	23	457	479	457	479	0.99
13	13	0.0031	0.2	12.9	1.3	1	23	485	507	485	507	0.97

Sequence Information

Coding Sequence: ATGGCTACCGAAACGCAAACGAAGAACGCAGAAGAATGTTGTAGAACCTGCATGACCAATTCGTCTCATAAAATGATTGATATTTACACGCCTATTAACTCTCTGAGTGTCGTGGAAATGATAACATCGTGTACTACGATTAAGATTAGCTATGAAGACTCATTACCGAAATCGATATGTGATAGCTGTTTCAACTGTTTACAAAAGTTCTACAAATTCAAAAAACAAGTCGAAGCTATTGACTTCAAACTCCATGCGAAAGAAATAGAAAAGACTATGTGCGAAATTAAACTCGAAGACAAAGATAAACTTCAAGATGATGTTGACTGTGATGTAGACGACGGAATAGACCAATATTGTGAAGTGAAAATGGAGTTCAAACAAGAACAAGAAACCAATGACTATCCATTCGTCTGCACTAATTGTTTCGGAGTTTTCACTACTCTATCAGACTTGCAGACACACAGGAAAACACATAGGGTAAAACCAGTGCATAAATGCGATAAATGCAGCAAGCAATTCACAAAACCATCAAAATTAGAGAGACACAAACGCATACATGAAAAGGGCCCCCATGCATGCACACTATGCCCAGAAACTTTCAAACACCACACCAAATACGTTCAACACTTGTTACAGCATAATCAAGAAGAACCGGATAACCCAAACGAAAACCAAAGCGATAATCAAAATTATGAATGCCATATCTGCaattccatttttaaatcttcacAATCGCTCGCTGGCCATATGCGGAAACATAGTTCGAAAGACCGCATCCTTAGTTGCCGTATATGCGATAAAGTGTTTAAGAAAATAAGTCACTTGAAAAGACATGAGCTATGCCACGAGAATAATAGGCCGTATAAATGTTTGCTTTGTCCAAAATCGTTTACGTCagacatcatttttaaagaaCATGTTAACAAGCATGCCGGTGTAAAGAGTCACGTTTGTCCGATTTGTTCTAAGGCATTTTCTCACGTGTCTTCTCTGAACACGCATATTAAAATACACACAAAGGAGAAATCCTACTTGTGCCCCACTTGTGGGAAGAGCTTTGATTCCGGTAACAATCTGAATCAGCACATGAGAAGGCATCTTGGTGTGAAGCTGTTTGCGTGCAGTCTGTGCCCTAAGAGATTTGTTAGcaaagGCGAGCTCAAATCCCACGGTACAACGCACACGGGGGAGCGTTCGCACGCGTGCGAACAGTGTGGCGCCACCTTTACCAAAGGCAGCTCGCTTCAGAAACACACGCTGAACCACCGCGGGGTCAAGCCACACCAATGTGACGCCTGCCCTATGAAGTTCGCAAGCAGAGACCATCTGAAGCGTCATTACCGTATCCACACTGGCGAGAAGCCCTACCGCTGCCAGTACTGCGCGCGCGCATTCACGCAGAGTAACGACCTCGCCAAGCATCGCCGCTCGCATCTCGGCGACAGGCCGCACAAGTGCCTCCAATGCCCTGAAAGTTTCCGACTGATCACTGAACTGCGTCAGCACATATCACAGCATTTCACTGGACAATTGCCTGTCGTCAGTTCAGTGGAAAATGCTGATAAATTGGACAAGTCCAATGAAACCTTTACTGAGTGTAATGGTGCCGCTAATAAAATAGACACAATTCTTGAAGGCGAAGAagaccggaagacgcagtgttggcaggcctcccactag
Protein Sequence: MATETQTKNAEECCRTCMTNSSHKMIDIYTPINSLSVVEMITSCTTIKISYEDSLPKSICDSCFNCLQKFYKFKKQVEAIDFKLHAKEIEKTMCEIKLEDKDKLQDDVDCDVDDGIDQYCEVKMEFKQEQETNDYPFVCTNCFGVFTTLSDLQTHRKTHRVKPVHKCDKCSKQFTKPSKLERHKRIHEKGPHACTLCPETFKHHTKYVQHLLQHNQEEPDNPNENQSDNQNYECHICNSIFKSSQSLAGHMRKHSSKDRILSCRICDKVFKKISHLKRHELCHENNRPYKCLLCPKSFTSDIIFKEHVNKHAGVKSHVCPICSKAFSHVSSLNTHIKIHTKEKSYLCPTCGKSFDSGNNLNQHMRRHLGVKLFACSLCPKRFVSKGELKSHGTTHTGERSHACEQCGATFTKGSSLQKHTLNHRGVKPHQCDACPMKFASRDHLKRHYRIHTGEKPYRCQYCARAFTQSNDLAKHRRSHLGDRPHKCLQCPESFRLITELRQHISQHFTGQLPVVSSVENADKLDKSNETFTECNGAANKIDTILEGEEDRKTQCWQASH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00156470;
90% Identity: iTF_01135027;
80% Identity: -